Deep sequencing reads for mature sequence MIMAT0018813

Stem-loop ID tca-mir-3864
Mature ID tca-miR-3864-3p
Reads
           tca-miR-3864-5p                   tca-miR-3864-3p                     Count     RPM (mean number of reads per million)
..........GGCGACAUAGGCAUGGUUUGAGUUUG...........................................  6         0.774
..........GGCGACAUAGGCAUGGUUUG.................................................  4         0.516
..........GGCGACAUAGGCAUGGUUUGA................................................  2         0.258
..........GGCGACAUAGGCAUGGUUU..................................................  2         0.258
..........GGCGACAUAGGCAUGGUUUGAG...............................................  2         0.258
.......................................AAUAAACUUGAAACCUCCUAC...................  2         0.258
.......................................AAUAAACUUGAAACCUCCU.....................  2         8.5
...............................................UGAAACCUCCUACUAUGUCGC...........  4         0.516
...............................................UGAAACCUCCUACUAUGUC.............  2         0.258
...............................................UGAAACCUCCUACUAUGUCGCAGAA.......  2         0.258
...............................................UGAAACCUCCUACUAUGUCGCA..........  2         0.258
...............................................UGAAACCUCCUACUAUGUCGCAG.........  2         0.258
................................................GAAACCUCCUACUAUGUCGCA..........  2         8.5
................................................GAAACCUCCUACUAUGUC.............  2         0.258
................................................GAAACCUCCUACUAUGUCGC...........  2         0.258
.................................................AAACCUCCUACUAUGUCGCA..........  2         0.258
.................................................AAACCUCCUACUAUGUCG............  2         0.258
..................................................AACCUCCUACUAUGUCGCAG.........  2         0.258
..................................................AACCUCCUACUAUGUCGCA..........  2         0.258
...................................................ACCUCCUACUAUGUCGCA..........  2         0.258
...................................................ACCUCCUACUAUGUCGCAGAAUAAUU..  2         0.258
....................................................CCUCCUACUAUGUCGCAGA........  4         0.516
AGUGAUGUGGGGCGACAUAGGCAUGGUUUGAGUUUGUUUAAUAAACUUGAAACCUCCUACUAUGUCGCAGAAUAAUUAG
.....(((...(((((((((....(((((((((((((...)))))))).))))).....)))))))))...)))..... (-26.50)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000199 82adult GEO : GSM639446 genotype: wild type, gender: male and female [ Marco A et al.]
ER0000000200 10embryo GEO : GSM639447 genotype: wild type, age: 0-5 days, gender: male and female [ Marco A et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).