Deep sequencing reads for mature sequence MIMAT0018737

Stem-loop ID tca-mir-3477
Mature ID tca-miR-3477-3p
Reads
                      tca-miR-3477-5p                    tca-miR-3477-3p                               Count     RPM (mean number of reads per million)
......................UAAUCUCAUUUGGUAACUGUGA.........................................................  122       15.7
......................UAAUCUCAUUUGGUAACUG............................................................  78        18.3
......................UAAUCUCAUUUGGUAACUGUG..........................................................  74        17.8
......................UAAUCUCAUUUGGUAACUGUGAG........................................................  46        5.93
......................UAAUCUCAUUUGGUAACUGU...........................................................  42        13.7
......................UAAUCUCAUUUGGUAACU.............................................................  40        5.16
......................UAAUCUCAUUUGGUAACUGUGAGG.......................................................  2         0.258
.......................AAUCUCAUUUGGUAACUGUGA.........................................................  28        3.61
.......................AAUCUCAUUUGGUAACUGUGAG........................................................  20        2.58
.......................AAUCUCAUUUGGUAACUGUG..........................................................  14        1.81
.......................AAUCUCAUUUGGUAACUGU...........................................................  8         1.03
.......................AAUCUCAUUUGGUAACUG............................................................  4         0.516
........................AUCUCAUUUGGUAACUGUGA.........................................................  2         0.258
..........................................................UCAGACUACUGAAUGGGAUCGAC....................  160       45.4
..........................................................UCAGACUACUGAAUGGGAUCG......................  62        16.2
..........................................................UCAGACUACUGAAUGGGA.........................  48        30.9
..........................................................UCAGACUACUGAAUGGGAUC.......................  46        22.4
..........................................................UCAGACUACUGAAUGGGAU........................  38        4.9
..........................................................UCAGACUACUGAAUGGGAUCGA.....................  24        19.6
..........................................................UCAGACUACUGAAUGGGAUCGACA...................  2         0.258
..........................................................UCAGACUACUGAAUGGGAUCGACAA..................  2         0.258
...........................................................CAGACUACUGAAUGGGAUCGAC....................  92        20.1
...........................................................CAGACUACUGAAUGGGAUCG......................  42        30.1
...........................................................CAGACUACUGAAUGGGAUC.......................  14        10
...........................................................CAGACUACUGAAUGGGAUCGA.....................  8         1.03
...........................................................CAGACUACUGAAUGGGAU........................  6         0.774
...........................................................CAGACUACUGAAUGGGAUCGACA...................  2         0.258
.............................................................GACUACUGAAUGGGAUCG......................  2         0.258
UGCACGCUUGACUGCGUUUCGUUAAUCUCAUUUGGUAACUGUGAGGUUUGUUUAUUCCUCAGACUACUGAAUGGGAUCGACAAAAUGUGGUUUUGUUUUCA
.....((..(((..(((((.((..((((((((..(((..(.(((((..........))))).).)))..))))))))..)).)))))..)))..))..... (-36.00)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000199 2638adult GEO : GSM639446 genotype: wild type, gender: male and female [ Marco A et al.]
ER0000000200 56embryo GEO : GSM639447 genotype: wild type, age: 0-5 days, gender: male and female [ Marco A et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).