Deep sequencing reads for mature sequence MIMAT0018657

Stem-loop ID tca-mir-3816
Mature ID tca-miR-3816-3p
Reads
                                                          tca-miR-3816-5p                    tca-miR-3816-3p                                                                  Count     RPM (mean number of reads per million)
..........................................................UACAAGGCAUGUUUGGCAGCAA............................................................................................  10        1.29
..........................................................UACAAGGCAUGUUUGGCAGCA.............................................................................................  8         1.03
..........................................................UACAAGGCAUGUUUGGCAGCAAU...........................................................................................  4         0.516
..........................................................UACAAGGCAUGUUUGGCAGC..............................................................................................  4         0.516
..........................................................UACAAGGCAUGUUUGGCAGCAAUU..........................................................................................  2         0.258
...........................................................ACAAGGCAUGUUUGGCAGCAAU...........................................................................................  1174      151
...........................................................ACAAGGCAUGUUUGGCAGCA.............................................................................................  684       88.2
...........................................................ACAAGGCAUGUUUGGCAGC..............................................................................................  452       58.3
...........................................................ACAAGGCAUGUUUGGCAGCAA............................................................................................  170       21.9
...........................................................ACAAGGCAUGUUUGGCAG...............................................................................................  114       14.7
...........................................................ACAAGGCAUGUUUGGCAGCAAUU..........................................................................................  36        4.64
...........................................................ACAAGGCAUGUUUGGCAGCAAUUA.........................................................................................  20        2.58
............................................................CAAGGCAUGUUUGGCAGC..............................................................................................  10        1.29
............................................................CAAGGCAUGUUUGGCAGCA.............................................................................................  6         0.774
............................................................CAAGGCAUGUUUGGCAGCAAU...........................................................................................  2         0.258
.............................................................AAGGCAUGUUUGGCAGCAA............................................................................................  2         0.258
.............................................................AAGGCAUGUUUGGCAGCAAU...........................................................................................  2         0.258
..............................................................................................AUUGCUGCCAUUCAUACCUUAC........................................................  4         0.516
...............................................................................................UUGCUGCCAUUCAUACCUUAC........................................................  408       60.9
...............................................................................................UUGCUGCCAUUCAUACCU...........................................................  188       24.2
...............................................................................................UUGCUGCCAUUCAUACCUUACA.......................................................  108       13.9
...............................................................................................UUGCUGCCAUUCAUACCUU..........................................................  72        9.29
...............................................................................................UUGCUGCCAUUCAUACCUUACAA......................................................  32        4.13
...............................................................................................UUGCUGCCAUUCAUACCUUA.........................................................  8         1.03
...............................................................................................UUGCUGCCAUUCAUACCUUACAAU.....................................................  6         0.774
................................................................................................UGCUGCCAUUCAUACCUUAC........................................................  242       31.2
................................................................................................UGCUGCCAUUCAUACCUU..........................................................  46        5.93
................................................................................................UGCUGCCAUUCAUACCUUACA.......................................................  26        3.35
................................................................................................UGCUGCCAUUCAUACCUUA.........................................................  14        1.81
................................................................................................UGCUGCCAUUCAUACCUUACAA......................................................  12        1.55
................................................................................................UGCUGCCAUUCAUACCUUACAAU.....................................................  8         1.03
.................................................................................................GCUGCCAUUCAUACCUUAC........................................................  10        1.29
.................................................................................................GCUGCCAUUCAUACCUUA.........................................................  2         0.258
GAUAGUGCAGAUUUAGAAUUGUAUUUUAGUUGAGCUGGGCAAAUUUAUUGUGGCCGGUUACAAGGCAUGUUUGGCAGCAAUUAGCUUUUGUAAUAUUGCUGCCAUUCAUACCUUACAAUUGGUCUCAGUGUUUCCAACACCGAUAAACCUUAAUCACUUUUUUAGAAUUGUA
.....(((((.(((((((..(((((...(((....(((.......(((((.((((((((..((((.(((..((((((((((..((....))...))))))))))..))).))))..)))))))).))))).........)))...)))...))).))..))))))).))))) (-50.59)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000199 6788adult GEO : GSM639446 genotype: wild type, gender: male and female [ Marco A et al.]
ER0000000200 8embryo GEO : GSM639447 genotype: wild type, age: 0-5 days, gender: male and female [ Marco A et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).