miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0018646
Stem-loop ID	tca-mir-3812
Mature ID	tca-miR-3812-5p
Reads	tca-miR-3812-5p tca-miR-3812-3p Count RPM (mean number of reads per million) ..............................UAAGUGAUUUUGAUGACACUA..................................................................... 30 7.74 ..............................UAAGUGAUUUUGAUGACACU...................................................................... 22 5.67 ..............................UAAGUGAUUUUGAUGACAC....................................................................... 16 4.13 ..............................UAAGUGAUUUUGAUGACA........................................................................ 12 3.1 ..............................UAAGUGAUUUUGAUGACACUAU.................................................................... 10 2.58 ...............................AAGUGAUUUUGAUGACACUA..................................................................... 2 0.516 ...............................AAGUGAUUUUGAUGACACUAUU................................................................... 2 0.516 ...............................AAGUGAUUUUGAUGACACU...................................................................... 2 0.516 ...............................AAGUGAUUUUGAUGACACUAU.................................................................... 2 0.516 .................................................................UACUGGCACAUCAUCACUUAGC................................. 2 0.516 .................................................................UACUGGCACAUCAUCACUU.................................... 2 0.516 .................................................................UACUGGCACAUCAUCACU..................................... 2 0.516 ..................................................................ACUGGCACAUCAUCACUUAGC................................. 744 192 ..................................................................ACUGGCACAUCAUCACUU.................................... 212 54.7 ..................................................................ACUGGCACAUCAUCACUUA................................... 114 29.4 ..................................................................ACUGGCACAUCAUCACUUAG.................................. 58 15 ..................................................................ACUGGCACAUCAUCACUUAGCA................................ 20 5.16 ..................................................................ACUGGCACAUCAUCACUUAGCAU............................... 4 1.03 ....................................................................UGGCACAUCAUCACUUAGC................................. 2 0.516 UUUUUUAGGAUUGUGAGCUGAGGCUCGUUUUAAGUGAUUUUGAUGACACUAUUGGUUAUGAACAAUACUGGCACAUCAUCACUUAGCAUGAGCUUUAGAUUUUCGUCAAGUUCUACCAAA .....(((((((((((.(((((((((((.((((((((...(((((.((.(((((........))))).))...))))))))))))).)))))))))))....))).).)))))))..... (-38.50)

                              tca-miR-3812-5p                   tca-miR-3812-3p                                           Count     RPM (mean number of reads per million)
..............................UAAGUGAUUUUGAUGACACUA.....................................................................  30        7.74
..............................UAAGUGAUUUUGAUGACACU......................................................................  22        5.67
..............................UAAGUGAUUUUGAUGACAC.......................................................................  16        4.13
..............................UAAGUGAUUUUGAUGACA........................................................................  12        3.1
..............................UAAGUGAUUUUGAUGACACUAU....................................................................  10        2.58
...............................AAGUGAUUUUGAUGACACUA.....................................................................  2         0.516
...............................AAGUGAUUUUGAUGACACUAUU...................................................................  2         0.516
...............................AAGUGAUUUUGAUGACACU......................................................................  2         0.516
...............................AAGUGAUUUUGAUGACACUAU....................................................................  2         0.516
.................................................................UACUGGCACAUCAUCACUUAGC.................................  2         0.516
.................................................................UACUGGCACAUCAUCACUU....................................  2         0.516
.................................................................UACUGGCACAUCAUCACU.....................................  2         0.516
..................................................................ACUGGCACAUCAUCACUUAGC.................................  744       192
..................................................................ACUGGCACAUCAUCACUU....................................  212       54.7
..................................................................ACUGGCACAUCAUCACUUA...................................  114       29.4
..................................................................ACUGGCACAUCAUCACUUAG..................................  58        15
..................................................................ACUGGCACAUCAUCACUUAGCA................................  20        5.16
..................................................................ACUGGCACAUCAUCACUUAGCAU...............................  4         1.03
....................................................................UGGCACAUCAUCACUUAGC.................................  2         0.516
UUUUUUAGGAUUGUGAGCUGAGGCUCGUUUUAAGUGAUUUUGAUGACACUAUUGGUUAUGAACAAUACUGGCACAUCAUCACUUAGCAUGAGCUUUAGAUUUUCGUCAAGUUCUACCAAA
.....(((((((((((.(((((((((((.((((((((...(((((.((.(((((........))))).))...))))))))))))).)))))))))))....))).).)))))))..... (-38.50)

miRBase

Deep sequencing reads for mature sequence MIMAT0018646

Filter reads

References

References
1	PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).