miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0018204
Stem-loop ID	hsa-mir-676
Mature ID	hsa-miR-676-3p
Reads	hsa-miR-676-5p hsa-miR-676-3p Count RPM (mean number of reads per million) .......UCUUCAACCUCAGGACUUGCA....................................... 4 1.01 ..........................................CUGUCCUAAGGUUGUUGAGUU.... 10 27 ..........................................CUGUCCUAAGGUUGUUGAGUUGU.. 3 0.761 ..........................................CUGUCCUAAGGUUGUUGAGUUG... 2 0.508 GCAUGACUCUUCAACCUCAGGACUUGCAGAAUUAAUGGAAUGCUGUCCUAAGGUUGUUGAGUUGUGC (((..((((..((((((.(((((..(((............))).))))).))))))..))))..))) (-31.70)

      hsa-miR-676-5p                     hsa-miR-676-3p              Count     RPM (mean number of reads per million)
.......UCUUCAACCUCAGGACUUGCA.......................................  4         1.01
..........................................CUGUCCUAAGGUUGUUGAGUU....  10        27
..........................................CUGUCCUAAGGUUGUUGAGUUGU..  3         0.761
..........................................CUGUCCUAAGGUUGUUGAGUUG...  2         0.508
GCAUGACUCUUCAACCUCAGGACUUGCAGAAUUAAUGGAAUGCUGUCCUAAGGUUGUUGAGUUGUGC
(((..((((..((((((.(((((..(((............))).))))).))))))..))))..))) (-31.70)

Accession

Read count

Tissue

Link

Comment

Reference

ER0000000110

melanoma

GEO : GSM458542

cell line: secondary cutaneous melanoma

[ Stark MS et al.]

ER0000000114

melanoma

GEO : GSM458546

cell line: secondary cutaneous melanoma

[ Stark MS et al.]

ER0000000262

GEO : GSM337570

antibody: anti-Ago1 4B8

miRBase

Deep sequencing reads for mature sequence MIMAT0018204

Filter reads

References

References
1	PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).