miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0017426
Stem-loop ID	aly-MIR159b
Mature ID	aly-miR159b-3p
Reads	aly-miR159b-5p aly-miR159b-3p Count RPM (mean number of reads per million) ...............AGAGCUCCUUGAAGUUCAAUGG..................................................................................................................................................................... 1 41.6 ...............AGAGCUCCUUGAAGUUCAAUG...................................................................................................................................................................... 1 41.6 ................GAGCUCCUUGAAGUUCAAUGG..................................................................................................................................................................... 54 2.25e+03 ................GAGCUCCUUGAAGUUCAAUG...................................................................................................................................................................... 4 166 ................GAGCUCCUUGAAGUUCAAUGGA.................................................................................................................................................................... 1 41.6 .................AGCUCCUUGAAGUUCAAUGGA.................................................................................................................................................................... 7 291 .......................................................GUAAAGCUGCUAAGCUAUGGA.............................................................................................................................. 2 83.2 ..........................................................AAGCUGCUAAGCUAUGGAUCC........................................................................................................................... 1 41.6 ...........................................................AGCUGCUAAGCUAUGGAUCCC.......................................................................................................................... 13 541 ...........................................................AGCUGCUAAGCUAUGGAUCC........................................................................................................................... 2 83.2 ......................................................................................................................AUUCCAUAUCUCAGGAGCUUU............................................................... 6 250 .......................................................................................................................................................................CUUUGGAUUGAAGGGAGCUCUU............. 3 125 .......................................................................................................................................................................CUUUGGAUUGAAGGGAGCUCU.............. 1 41.6 ........................................................................................................................................................................UUUGGAUUGAAGGGAGCUCUU............. 1809 7.53e+04 ........................................................................................................................................................................UUUGGAUUGAAGGGAGCUCU.............. 37 1.54e+03 ........................................................................................................................................................................UUUGGAUUGAAGGGAGCUCUUC............ 17 708 ........................................................................................................................................................................UUUGGAUUGAAGGGAGCUC............... 2 83.2 .........................................................................................................................................................................UUGGAUUGAAGGGAGCUCUU............. 9 375 .........................................................................................................................................................................UUGGAUUGAAGGGAGCUCU.............. 1 41.6 GGAAGAAGAAGAGGAAGAGCUCCUUGAAGUUCAAUGGAGGGUUUAGCAGGGUAAAGUAAAGCUGCUAAGCUAUGGAUCCCAUAAACCUUAUCAAAUUCAAAAUAAGGAUUUUUUAUGGAUUCCAUAUCUCAGGAGCUUUCACUUACCCCUUUAAUGGCUUCACUCUUCUUUGGAUUGAAGGGAGCUCUUCAUCUCUACCUCC (((.(.(((.((.((((((((((((..(((((((.(((((((..(((((((..((((((((((.((.((.((((((..(((((((((((((..........))))))....)))))))..)))))).)).)).)))))).))))..))))......)))..))))))).)))))))..)))))))))))).))))).).))) (-85.90)

               aly-miR159b-5p                                                                                                                                          aly-miR159b-3p                       Count     RPM (mean number of reads per million)
...............AGAGCUCCUUGAAGUUCAAUGG.....................................................................................................................................................................  1         41.6
...............AGAGCUCCUUGAAGUUCAAUG......................................................................................................................................................................  1         41.6
................GAGCUCCUUGAAGUUCAAUGG.....................................................................................................................................................................  54        2.25e+03
................GAGCUCCUUGAAGUUCAAUG......................................................................................................................................................................  4         166
................GAGCUCCUUGAAGUUCAAUGGA....................................................................................................................................................................  1         41.6
.................AGCUCCUUGAAGUUCAAUGGA....................................................................................................................................................................  7         291
.......................................................GUAAAGCUGCUAAGCUAUGGA..............................................................................................................................  2         83.2
..........................................................AAGCUGCUAAGCUAUGGAUCC...........................................................................................................................  1         41.6
...........................................................AGCUGCUAAGCUAUGGAUCCC..........................................................................................................................  13        541
...........................................................AGCUGCUAAGCUAUGGAUCC...........................................................................................................................  2         83.2
......................................................................................................................AUUCCAUAUCUCAGGAGCUUU...............................................................  6         250
.......................................................................................................................................................................CUUUGGAUUGAAGGGAGCUCUU.............  3         125
.......................................................................................................................................................................CUUUGGAUUGAAGGGAGCUCU..............  1         41.6
........................................................................................................................................................................UUUGGAUUGAAGGGAGCUCUU.............  1809      7.53e+04
........................................................................................................................................................................UUUGGAUUGAAGGGAGCUCU..............  37        1.54e+03
........................................................................................................................................................................UUUGGAUUGAAGGGAGCUCUUC............  17        708
........................................................................................................................................................................UUUGGAUUGAAGGGAGCUC...............  2         83.2
.........................................................................................................................................................................UUGGAUUGAAGGGAGCUCUU.............  9         375
.........................................................................................................................................................................UUGGAUUGAAGGGAGCUCU..............  1         41.6
GGAAGAAGAAGAGGAAGAGCUCCUUGAAGUUCAAUGGAGGGUUUAGCAGGGUAAAGUAAAGCUGCUAAGCUAUGGAUCCCAUAAACCUUAUCAAAUUCAAAAUAAGGAUUUUUUAUGGAUUCCAUAUCUCAGGAGCUUUCACUUACCCCUUUAAUGGCUUCACUCUUCUUUGGAUUGAAGGGAGCUCUUCAUCUCUACCUCC
(((.(.(((.((.((((((((((((..(((((((.(((((((..(((((((..((((((((((.((.((.((((((..(((((((((((((..........))))))....)))))))..)))))).)).)).)))))).))))..))))......)))..))))))).)))))))..)))))))))))).))))).).))) (-85.90)

miRBase

Deep sequencing reads for mature sequence MIMAT0017426

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References

References
1	PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus" Ma Z, Coruh C, Axtell MJ Plant Cell. 22:1090-1103(2010).