Deep sequencing reads for mature sequence MIMAT0017249

Stem-loop ID mmu-mir-495
Mature ID mmu-miR-495-5p
Reads 
   mmu-miR-495-5p                       mmu-miR-495-3p           Count     RPM (mean number of reads per million)
...GAAGUUGCCCAUGUUAUUUUUCG.....................................  281       4.69
...GAAGUUGCCCAUGUUAUUUUUC......................................  17        0.16
...GAAGUUGCCCAUGUUAUUUUUCGC....................................  3         0.0208
...GAAGUUGCCCAUGUUAUU..........................................  2         0.0147
...GAAGUUGCCCAUGUUAUUUU........................................  1         0.0101
...GAAGUUGCCCAUGUUAUUUUUCGCUUU.................................  1         0.00351
....AAGUUGCCCAUGUUAUUUUUCG.....................................  8         0.0844
.....AGUUGCCCAUGUUAUUUUUCG.....................................  1         0.0138
.........................GCUUUUAUUUGUGACGA.....................  1         0.013
....................................UGACGAAACAAACAUGGUGCACU....  1         0.0133
........................................GAAACAAACAUGGUGCACUUCUU  3         0.0802
.........................................AAACAAACAUGGUGCACUUCUU  13245     136
.........................................AAACAAACAUGGUGCACUUCU.  958       11.1
.........................................AAACAAACAUGGUGCACUUC..  172       2.2
.........................................AAACAAACAUGGUGCACUU...  154       1.59
.........................................AAACAAACAUGGUGCAC.....  65        0.744
.........................................AAACAAACAUGGUGCACU....  59        0.658
..........................................AACAAACAUGGUGCACUUCUU  1039      8.83
..........................................AACAAACAUGGUGCACUUCU.  93        0.861
..........................................AACAAACAUGGUGCACUUC..  23        0.159
..........................................AACAAACAUGGUGCACUU...  20        0.27
..........................................AACAAACAUGGUGCACU....  8         0.0644
...........................................ACAAACAUGGUGCACUUCUU  61        0.839
...........................................ACAAACAUGGUGCACUUCU.  7         0.0434
...........................................ACAAACAUGGUGCACUU...  4         0.0523
............................................CAAACAUGGUGCACUUCUU  21        0.188
............................................CAAACAUGGUGCACUUC..  1         0.00311
.............................................AAACAUGGUGCACUUCUU  63        1.14
.............................................AAACAUGGUGCACUUCU.  3         0.023
..............................................AACAUGGUGCACUUCUU  22        0.287
AAAGAAGUUGCCCAUGUUAUUUUUCGCUUUUAUUUGUGACGAAACAAACAUGGUGCACUUCUU
.(((((((.(((((((((.(((.((((........)))).)))...))))))).))))))))) (-22.40)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000033 4testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 5testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000036 18brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 93brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 89brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 10brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 565brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 15whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 189whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 147whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 23whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 427whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 725whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 860whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 788whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 800whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 830whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 760whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 3704whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 20embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 116embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 110embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 9embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 12embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 28embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 19embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 1embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 1embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 10embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 7embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000218 1spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 4spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 6spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 1spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 10spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 1peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 1lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000230 1bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000233 1peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 1bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 193bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 98spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 1thymus GEO : GSM539856
ER0000000243 1lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 1332spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000246 5lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 2402 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 1354 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 3heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 871brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 4lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 1liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 1kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 9pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 116skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 50skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 32salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 1testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 13ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 1spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).