Deep sequencing reads for mature sequence MIMAT0017058

Stem-loop ID mmu-mir-26a-2
Mature ID mmu-miR-26a-2-3p
Reads 
             mmu-miR-26a-5p                      mmu-miR-26a-2-3p                      Count     RPM (mean number of reads per million)
........CUGGAUUCAAGUAAUCCAGGAUAGGCU.................................................  4         0.0259
.........UGGAUUCAAGUAAUCCAGGAUAGGCU.................................................  2         0.0189
.........UGGAUUCAAGUAAUCCAGG........................................................  1         0.0118
.........UGGAUUCAAGUAAUCCAGGAUAGGC..................................................  1         0.00975
..........GGAUUCAAGUAAUCCAGGAUAGGCU.................................................  2         0.0129
...........GAUUCAAGUAAUCCAGGAUAGGCU.................................................  8         0.198
...........GAUUCAAGUAAUCCAGGAUAGGC..................................................  2         0.0135
...........GAUUCAAGUAAUCCAGGAUAGG...................................................  1         0.00227
............AUUCAAGUAAUCCAGGAUAGGCU.................................................  234       2.31
............AUUCAAGUAAUCCAGGAUAGGC..................................................  38        0.634
............AUUCAAGUAAUCCAGGAUAGG...................................................  10        0.0522
............AUUCAAGUAAUCCAGGAUA.....................................................  4         0.0147
............AUUCAAGUAAUCCAGGAUAGGCUG................................................  2         0.00326
............AUUCAAGUAAUCCAGGAUAG....................................................  2         0.00455
............AUUCAAGUAAUCCAGGAUAGGCUGU...............................................  1         0.00952
.............UUCAAGUAAUCCAGGAUAGGCU.................................................  811624    5.56e+03
.............UUCAAGUAAUCCAGGAUAGGC..................................................  135964    1.31e+03
.............UUCAAGUAAUCCAGGAUAGG...................................................  113095    1.01e+03
.............UUCAAGUAAUCCAGGAUAG....................................................  53099     277
.............UUCAAGUAAUCCAGGAUA.....................................................  2638      33.3
.............UUCAAGUAAUCCAGGAU......................................................  2249      32.5
.............UUCAAGUAAUCCAGGAUAGGCUGU...............................................  1881      10.7
.............UUCAAGUAAUCCAGGAUAGGCUG................................................  1873      11.7
.............UUCAAGUAAUCCAGGAUAGGCUGUG..............................................  29        0.1
.............UUCAAGUAAUCCAGGAUAGGCUGUGU.............................................  6         0.0368
.............UUCAAGUAAUCCAGGAUAGGCUGUGUC............................................  2         0.00908
.............UUCAAGUAAUCCAGGAUAGGCUGUGUCC...........................................  1         0.0267
..............UCAAGUAAUCCAGGAUAGGCU.................................................  6269      44.3
..............UCAAGUAAUCCAGGAUAGGC..................................................  1713      9.6
..............UCAAGUAAUCCAGGAUAGG...................................................  1360      5.76
..............UCAAGUAAUCCAGGAUAG....................................................  271       0.687
..............UCAAGUAAUCCAGGAUA.....................................................  46        0.261
..............UCAAGUAAUCCAGGAUAGGCUG................................................  31        0.12
..............UCAAGUAAUCCAGGAUAGGCUGU...............................................  25        0.182
...............CAAGUAAUCCAGGAUAGGCU.................................................  1405      10.9
...............CAAGUAAUCCAGGAUAGGC..................................................  448       3.73
...............CAAGUAAUCCAGGAUAGG...................................................  87        0.779
...............CAAGUAAUCCAGGAUAG....................................................  14        0.0556
...............CAAGUAAUCCAGGAUAGGCUGU...............................................  6         0.0391
...............CAAGUAAUCCAGGAUAGGCUG................................................  1         0.0092
................AAGUAAUCCAGGAUAGGCU.................................................  5655      62.1
................AAGUAAUCCAGGAUAGGC..................................................  1418      15.8
................AAGUAAUCCAGGAUAGG...................................................  854       6.83
................AAGUAAUCCAGGAUAGGCUGU...............................................  12        0.118
................AAGUAAUCCAGGAUAGGCUG................................................  12        0.172
.................AGUAAUCCAGGAUAGGCU.................................................  292       6.34
.................AGUAAUCCAGGAUAGGC..................................................  48        0.474
.................AGUAAUCCAGGAUAGGCUG................................................  2         0.0927
..................GUAAUCCAGGAUAGGCU.................................................  2097      28.3
..................GUAAUCCAGGAUAGGCUGU...............................................  5         0.0622
..................GUAAUCCAGGAUAGGCUG................................................  3         0.146
..................GUAAUCCAGGAUAGGCUGUGUC............................................  1         0.00465
...................UAAUCCAGGAUAGGCUGU...............................................  93        1.18
...................UAAUCCAGGAUAGGCUG................................................  45        1.57
....................AAUCCAGGAUAGGCUGU...............................................  83        1.13
...............................................GAGGCCUGUUCUUGAUUACUUGUUUC...........  2         0.00372
...............................................GAGGCCUGUUCUUGAUUACUUGUUU............  1         0.00525
................................................AGGCCUGUUCUUGAUUACUUGUUU............  6         0.0121
................................................AGGCCUGUUCUUGAUUACUUGUUUC...........  2         0.00488
................................................AGGCCUGUUCUUGAUUACUUGU..............  2         0.0822
................................................AGGCCUGUUCUUGAUUACUUGUU.............  2         0.00563
................................................AGGCCUGUUCUUGAUUACUUG...............  1         0.00241
................................................AGGCCUGUUCUUGAUUACUU................  1         0.00207
...................................................CCUGUUCUUGAUUACUUGUUUC...........  81        0.798
...................................................CCUGUUCUUGAUUACUUGUUU............  25        0.349
...................................................CCUGUUCUUGAUUACUUGUU.............  17        0.135
....................................................CUGUUCUUGAUUACUUGUUU............  1         0.00227
....................................................CUGUUCUUGAUUACUUGUUUC...........  1         0.0123
.....................................................UGUUCUUGAUUACUUGUUUC...........  2         0.0466
GGCUGCGGCUGGAUUCAAGUAAUCCAGGAUAGGCUGUGUCCGUCCAUGAGGCCUGUUCUUGAUUACUUGUUUCUGGAGGCAGCG
.(((((..(..((..(((((((((.(((((((((((((......)))..)))))))))).)))))))))..))..)..))))). (-44.90)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 62ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 6501ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 4651ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 440ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 440testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 2469testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 2370testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 338testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 15480brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 72539brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 86589brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 10470brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 298250brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 192whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 2196whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 1986whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 317whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 6440whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 8689whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 9874whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 9354whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 9657whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 9284whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 8704whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 29697whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 2365embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 15364embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 16499embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 2115embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 2481embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 9119embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 9180embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 838embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 5983embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 18010embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 19985embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 17178bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 28877bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 51519spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 25811spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 58323spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 7272spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 7907spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 7561spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 4669spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 31134peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 6159spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 10533lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 4995lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 13459bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 24408bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 19965bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 162001peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 39557peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 8901bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 10648bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 6354spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 29189thymus GEO : GSM539856
ER0000000238 39849spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 57473spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 7359spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 14949lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 15183lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 26772lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 104819spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 32973lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 24631lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 10693 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 7283 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 3305heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 23887brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 29224lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 10402liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 29700kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 19656pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 19483skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 20934skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 30674salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 1544testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 16303ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 9692spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 35283lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).