Deep sequencing reads for mature sequence MIMAT0017048

Stem-loop ID mmu-mir-107
Mature ID mmu-miR-107-5p
Reads 
              mmu-miR-107-5p                       mmu-miR-107-3p                        Count     RPM (mean number of reads per million)
.............CAGCUUCUUUACAGUGUUGCCUUG..................................................  20        0.157
.............CAGCUUCUUUACAGUGUUGCCU....................................................  13        0.103
.............CAGCUUCUUUACAGUGUUGCCUU...................................................  5         0.0245
.............CAGCUUCUUUACAGUGUUGCCUUGU.................................................  4         0.101
.............CAGCUUCUUUACAGUGUUGC......................................................  2         0.0135
.............CAGCUUCUUUACAGUGUUG.......................................................  1         0.00952
.............CAGCUUCUUUACAGUGUUGCC.....................................................  1         0.00271
..............AGCUUCUUUACAGUGUUGCCUUG..................................................  90        0.994
..............AGCUUCUUUACAGUGUUGCCUU...................................................  15        0.0982
..............AGCUUCUUUACAGUGUUGCCU....................................................  13        0.114
..............AGCUUCUUUACAGUGUUGCCUUGU.................................................  9         0.0987
..............AGCUUCUUUACAGUGUUGCC.....................................................  1         0.0104
...............GCUUCUUUACAGUGUUGCCUUG..................................................  2         0.0683
....................UUUACAGUGUUGCCUUG..................................................  1         0.00847
.........................AGUGUUGCCUUGUGGCAUGGAGUUC.....................................  1         0.0453
..........................GUGUUGCCUUGUGGCAUGGAGUUC.....................................  1         0.00257
...................................UGUGGCAUGGAGUUCAAGCAGCAU............................  1         0.00105
.................................................CAAGCAGCAUUGUACAGGGCUA................  2         0.0123
.................................................CAAGCAGCAUUGUACAGGGCUAU...............  1         0.00227
..................................................AAGCAGCAUUGUACAGGGCUAU...............  935       7.59
..................................................AAGCAGCAUUGUACAGGGCUAUCA.............  235       2.29
..................................................AAGCAGCAUUGUACAGGGCUAUC..............  229       2.09
..................................................AAGCAGCAUUGUACAGGGCUA................  97        0.877
..................................................AAGCAGCAUUGUACAGGGCUAUCAA............  45        0.633
..................................................AAGCAGCAUUGUACAGGGCU.................  31        0.226
..................................................AAGCAGCAUUGUACAGGGCUAUCAAA...........  14        0.115
..................................................AAGCAGCAUUGUACAGGGC..................  10        0.191
..................................................AAGCAGCAUUGUACAGGG...................  6         0.0392
...................................................AGCAGCAUUGUACAGGGCUAU...............  1327617   4.51e+03
...................................................AGCAGCAUUGUACAGGGCUAUCA.............  228613    697
...................................................AGCAGCAUUGUACAGGGCUA................  213478    658
...................................................AGCAGCAUUGUACAGGGCUAUC..............  195447    605
...................................................AGCAGCAUUGUACAGGGCU.................  68904     234
...................................................AGCAGCAUUGUACAGGGC..................  15893     70.2
...................................................AGCAGCAUUGUACAGGG...................  3456      54.4
...................................................AGCAGCAUUGUACAGGGCUAUCAA............  2936      14.6
...................................................AGCAGCAUUGUACAGGGCUAUCAAA...........  272       1.67
...................................................AGCAGCAUUGUACAGGGCUAUCAAAG..........  26        0.102
...................................................AGCAGCAUUGUACAGGGCUAUCAAAGC.........  2         0.00492
...................................................AGCAGCAUUGUACAGGGCUAUCAAAGCA........  2         0.00438
....................................................GCAGCAUUGUACAGGGCUAU...............  3439      12.6
....................................................GCAGCAUUGUACAGGGCUAUCA.............  514       4.64
....................................................GCAGCAUUGUACAGGGCUA................  495       1.57
....................................................GCAGCAUUGUACAGGGCUAUC..............  217       1.07
....................................................GCAGCAUUGUACAGGGCUAUCAA............  7         0.0256
....................................................GCAGCAUUGUACAGGGCU.................  5         0.0346
....................................................GCAGCAUUGUACAGGGC..................  4         0.0429
....................................................GCAGCAUUGUACAGGGCUAUCAAA...........  1         0.0021
.....................................................CAGCAUUGUACAGGGCUAU...............  3457      10.4
.....................................................CAGCAUUGUACAGGGCUA................  283       0.9
.....................................................CAGCAUUGUACAGGGCUAUCA.............  123       0.674
.....................................................CAGCAUUGUACAGGGCUAUC..............  52        0.197
.....................................................CAGCAUUGUACAGGGCU.................  12        0.211
.....................................................CAGCAUUGUACAGGGCUAUCAA............  4         0.0127
.....................................................CAGCAUUGUACAGGGCUAUCAAA...........  1         0.00217
......................................................AGCAUUGUACAGGGCUAU...............  164       1.86
......................................................AGCAUUGUACAGGGCUAUCA.............  138       1.04
......................................................AGCAUUGUACAGGGCUAUC..............  87        0.469
......................................................AGCAUUGUACAGGGCUA................  55        0.232
......................................................AGCAUUGUACAGGGCUAUCAA............  7         0.0481
.......................................................GCAUUGUACAGGGCUAU...............  1478      29
.......................................................GCAUUGUACAGGGCUAUCA.............  1012      11
.......................................................GCAUUGUACAGGGCUAUC..............  562       7.54
.......................................................GCAUUGUACAGGGCUAUCAA............  81        0.676
.......................................................GCAUUGUACAGGGCUAUCAAA...........  10        0.171
........................................................CAUUGUACAGGGCUAUCA.............  143       1.38
........................................................CAUUGUACAGGGCUAUC..............  64        1.95
........................................................CAUUGUACAGGGCUAUCAA............  6         0.17
........................................................CAUUGUACAGGGCUAUCAAAGCA........  1         0.00202
........................................................CAUUGUACAGGGCUAUCAAA...........  1         0.0104
.........................................................AUUGUACAGGGCUAUCA.............  6993      98.7
.........................................................AUUGUACAGGGCUAUCAA............  316       5.61
.........................................................AUUGUACAGGGCUAUCAAA...........  32        0.409
..........................................................UUGUACAGGGCUAUCAA............  5         0.0214
...........................................................UGUACAGGGCUAUCAAA...........  2         0.013
UUCUCUGUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUGGCAUGGAGUUCAAGCAGCAUUGUACAGGGCUAUCAAAGCACAGAGAGC
(((((((((((((.((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))...))))))))))))). (-41.10)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 20ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 2671ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 1943ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 177ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 534testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 3259testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 3567testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 363testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 4087brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 18499brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 22739brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 2605brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 102235brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 280whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 2567whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 2339whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 373whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 7786whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 10827whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 12575whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 11080whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 11582whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 11170whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 10545whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 52126whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 4013embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 23001embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 25286embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 3026embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 5911embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 21282embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 20429embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 1562embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 8053embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 22993embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 26182embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 89071bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 93626bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 64608spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 83087spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 149382spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 47505spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 81155spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 94850spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 43172spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 57045peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 40787spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 38916lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 22136lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 109769bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 199688bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 560373bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 254535peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 47443peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 98490bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 60443bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 90435spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 60196thymus GEO : GSM539856
ER0000000238 64030spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 110398spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 83380spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 188040lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 315820lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 244124lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 439045spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 157803lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 90443lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 118399 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 47236 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 10700heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 272972brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 112288lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 39951liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 191214kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 30371pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 103720skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 41133skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 79562salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 20787testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 80451ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 62065spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 138891lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).