Deep sequencing reads for mature sequence MIMAT0017000

Stem-loop ID mmu-mir-195a
Mature ID mmu-miR-195a-3p
Reads 
                  mmu-miR-195a-5p                       mmu-miR-195a-3p                         Count     RPM (mean number of reads per million)
ACACCCAACUCUCCUGGCUC..........................................................................  4         0.0406
ACACCCAACUCUCCUGGCU...........................................................................  1         0.00508
.CACCCAACUCUCCUGGCUC..........................................................................  8         0.0779
..................UCUAGCAGCACAGAAAUAUUGG......................................................  36        0.702
..................UCUAGCAGCACAGAAAUAUUGGC.....................................................  15        0.488
..................UCUAGCAGCACAGAAAUAUUGGCA....................................................  15        0.362
..................UCUAGCAGCACAGAAAUAUUGGCAU...................................................  5         0.0995
..................UCUAGCAGCACAGAAAUAUUG.......................................................  1         0.0105
...................CUAGCAGCACAGAAAUAUUGGCA....................................................  108       2.91
...................CUAGCAGCACAGAAAUAUUGGC.....................................................  37        0.607
...................CUAGCAGCACAGAAAUAUUGG......................................................  21        0.283
...................CUAGCAGCACAGAAAUAUUGGCAU...................................................  17        0.173
...................CUAGCAGCACAGAAAUAUUG.......................................................  2         0.0169
...................CUAGCAGCACAGAAAUAUU........................................................  1         0.0022
...................CUAGCAGCACAGAAAUAUUGGCAUG..................................................  1         0.0023
....................UAGCAGCACAGAAAUAUUGGCA....................................................  33696     602
....................UAGCAGCACAGAAAUAUUGGC.....................................................  10472     209
....................UAGCAGCACAGAAAUAUUGGCAU...................................................  6053      78.5
....................UAGCAGCACAGAAAUAUUGG......................................................  5253      69.7
....................UAGCAGCACAGAAAUAUUG.......................................................  730       6.18
....................UAGCAGCACAGAAAUAUU........................................................  10        0.0426
....................UAGCAGCACAGAAAUAUUGGCAUG..................................................  8         0.0309
....................UAGCAGCACAGAAAUAU.........................................................  4         0.222
....................UAGCAGCACAGAAAUAUUGGCAUGG.................................................  2         0.0234
.....................AGCAGCACAGAAAUAUUGGCA....................................................  693       11.1
.....................AGCAGCACAGAAAUAUUGGC.....................................................  203       3.2
.....................AGCAGCACAGAAAUAUUGGCAU...................................................  143       2.12
.....................AGCAGCACAGAAAUAUUGG......................................................  54        0.475
.....................AGCAGCACAGAAAUAUUG.......................................................  20        0.126
......................GCAGCACAGAAAUAUUGGCA....................................................  106       1.55
......................GCAGCACAGAAAUAUUGGC.....................................................  28        0.826
......................GCAGCACAGAAAUAUUGG......................................................  19        0.228
......................GCAGCACAGAAAUAUUGGCAU...................................................  15        0.236
......................GCAGCACAGAAAUAUUG.......................................................  2         0.0143
.......................CAGCACAGAAAUAUUGGCA....................................................  48        2.23
.......................CAGCACAGAAAUAUUGGC.....................................................  17        0.221
.......................CAGCACAGAAAUAUUGGCAU...................................................  8         0.159
.......................CAGCACAGAAAUAUUGG......................................................  1         0.0023
........................AGCACAGAAAUAUUGGCA....................................................  108       0.721
........................AGCACAGAAAUAUUGGCAU...................................................  29        0.156
........................AGCACAGAAAUAUUGGC.....................................................  21        0.115
.........................GCACAGAAAUAUUGGCA....................................................  363       15.2
.........................GCACAGAAAUAUUGGCAU...................................................  36        0.419
..........................CACAGAAAUAUUGGCAU...................................................  2         0.00461
..........................................................CCAAUAUUGGCUGUGCUGCUCCA.............  18        0.301
..........................................................CCAAUAUUGGCUGUGCUGCUC...............  12        0.151
..........................................................CCAAUAUUGGCUGUGCUGCUCC..............  11        0.166
..........................................................CCAAUAUUGGCUGUGCUGCU................  4         0.041
...........................................................CAAUAUUGGCUGUGCUGCUCCA.............  1         0.0129
ACACCCAACUCUCCUGGCUCUAGCAGCACAGAAAUAUUGGCAUGGGGAAGUGAGUCUGCCAAUAUUGGCUGUGCUGCUCCAGGCAGGGUGGUGA
.((((..((((((((((....((((((((((.((((((((((.((.........))))))))))))..))))))))))))))).))))))))). (-49.40)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 11ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 1220ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 846ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 58ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 71testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 382testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 380testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 46testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 1079brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 5285brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 5530brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 683brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 21621brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 8whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 116whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 78whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 9whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 223whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 355whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 423whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 409whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 444whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 471whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 393whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 1419whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 27embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 141embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 169embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 17embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 1218embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 4939embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 4339embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 293embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 1359embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 5525embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 4948embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 10bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 7bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 6spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 20spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 134spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 5spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 60spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 51spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 8spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 47peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 1spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 1lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 20lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 5bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000231 7bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 1peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 1peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 5bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 21bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 2spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 2thymus GEO : GSM539856
ER0000000238 28spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 64spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 6spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 5lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 2lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 5lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 129spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 52lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 35lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 456 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 1 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 147heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 506brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 1656lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 99liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 778kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 150pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 1564skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 150skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 669salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 38testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 313ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 41spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 43lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).