Deep sequencing reads for mature sequence MIMAT0016983

Stem-loop ID mmu-mir-130a
Mature ID mmu-miR-130a-5p
Reads 
 mmu-miR-130a-5p                        mmu-miR-130a-3p            Count     RPM (mean number of reads per million)
.AGCUCUUUUCACAUUGUGCUAC.........................................  22        0.204
.AGCUCUUUUCACAUUGUGCUACU........................................  9         0.228
.AGCUCUUUUCACAUUGUGCU...........................................  4         0.0671
.AGCUCUUUUCACAUUGUGCUACUG.......................................  1         0.0123
.AGCUCUUUUCACAUUGUGC............................................  1         0.00257
..GCUCUUUUCACAUUGUGCUAC.........................................  138       1.6
..GCUCUUUUCACAUUGUGCUACU........................................  126       1.11
..GCUCUUUUCACAUUGUGCUA..........................................  28        0.624
..GCUCUUUUCACAUUGUGCU...........................................  9         0.0449
..GCUCUUUUCACAUUGUG.............................................  2         0.0236
..GCUCUUUUCACAUUGUGCUACUG.......................................  2         0.00332
....UCUUUUCACAUUGUGCUACU........................................  2         0.0129
....UCUUUUCACAUUGUGCUAC.........................................  1         0.00257
.....CUUUUCACAUUGUGCUACU........................................  1         0.0101
......UUUUCACAUUGUGCUAC.........................................  1         0.0101
.......UUUCACAUUGUGCUACU........................................  5         0.0403
........UUCACAUUGUGCUACUGU......................................  1         0.0645
.......................UGUCUAACGUGUACCGAGC......................  2         0.0489
........................GUCUAACGUGUACCGAG.......................  5         0.0204
.......................................AGCAGUGCAAUGUUAAAAGGGCAU.  5         0.0576
.......................................AGCAGUGCAAUGUUAAAAGGGC...  3         0.0284
........................................GCAGUGCAAUGUUAAAAGGGCAU.  146       1.95
........................................GCAGUGCAAUGUUAAAAGGGC...  18        0.232
........................................GCAGUGCAAUGUUAAAAGGGCA..  10        0.074
........................................GCAGUGCAAUGUUAAAAGG.....  5         0.0456
........................................GCAGUGCAAUGUUAAAAGGG....  1         0.00257
.........................................CAGUGCAAUGUUAAAAGGGCAU.  49424     598
.........................................CAGUGCAAUGUUAAAAGGGCA..  4400      40.1
.........................................CAGUGCAAUGUUAAAAGGGC...  4199      51.2
.........................................CAGUGCAAUGUUAAAAGG.....  2231      17.6
.........................................CAGUGCAAUGUUAAAAGGG....  1983      21.2
.........................................CAGUGCAAUGUUAAAAG......  112       2.18
.........................................CAGUGCAAUGUUAAAAGGGCAUC  40        0.187
..........................................AGUGCAAUGUUAAAAGGGCAU.  343       5.69
..........................................AGUGCAAUGUUAAAAGGGC...  61        0.883
..........................................AGUGCAAUGUUAAAAGGGCA..  35        0.478
..........................................AGUGCAAUGUUAAAAGG.....  8         0.0813
..........................................AGUGCAAUGUUAAAAGGG....  4         0.0368
..........................................AGUGCAAUGUUAAAAGGGCAUC  4         0.147
...........................................GUGCAAUGUUAAAAGGGCAU.  138       1.35
...........................................GUGCAAUGUUAAAAGGGCA..  7         0.0674
...........................................GUGCAAUGUUAAAAGGG....  3         0.0302
...........................................GUGCAAUGUUAAAAGGGC...  1         0.0101
............................................UGCAAUGUUAAAAGGGCAU.  17        0.441
............................................UGCAAUGUUAAAAGGGC...  8         0.153
............................................UGCAAUGUUAAAAGGGCA..  1         0.00952
.............................................GCAAUGUUAAAAGGGCAU.  56        0.771
.............................................GCAAUGUUAAAAGGGCA..  1         0.0104
.............................................GCAAUGUUAAAAGGGCAUC  1         0.00238
..............................................CAAUGUUAAAAGGGCAU.  21        0.348
GAGCUCUUUUCACAUUGUGCUACUGUCUAACGUGUACCGAGCAGUGCAAUGUUAAAAGGGCAUC
..((((((((.((((((..((.(((((......).))..)).))..)))))).))))))))... (-22.50)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 4ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 251ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 198ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 19ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 17testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 87testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 94testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 15testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 132brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 554brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 627brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 80brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 3072brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 43whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 353whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 335whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 57whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 1082whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 1498whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 1801whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 1667whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 1702whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 1601whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 1486whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 7488whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 939embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 5233embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 5716embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 699embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 422embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 1439embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 1393embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 108embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 922embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 2386embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 2831embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 267bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 210bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 64spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 8spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 12spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 26spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 24spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 16spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 33spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 9peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 4spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 8lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 17lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 729bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 3bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 3bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 30peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 6peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 43bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 447bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 1spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 13thymus GEO : GSM539856
ER0000000238 2spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 8spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 21spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 11lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 33lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 77lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 1405spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 13lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 6lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 8834 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 2222 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 260heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 949brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 2467lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 1552liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 2347kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 372pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 601skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 57skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 154salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 153testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 1405ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 13spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 23lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).