Deep sequencing reads for mature sequence MIMAT0016980

Stem-loop ID mmu-mir-23b
Mature ID mmu-miR-23b-5p
Reads 
       mmu-miR-23b-5p                       mmu-miR-23b-3p                  Count     RPM (mean number of reads per million)
....GCUUGGGUUCCUGGCAUGCUGAUU..............................................  1         0.00105
......UUGGGUUCCUGGCAUGCUGAUU..............................................  4         0.00742
......UUGGGUUCCUGGCAUGCUGAUUU.............................................  2         0.00376
......UUGGGUUCCUGGCAUGCUGAU...............................................  2         0.0072
......UUGGGUUCCUGGCAUGCUGA................................................  1         0.00259
.......UGGGUUCCUGGCAUGCUGAUUU.............................................  2411      6.77
.......UGGGUUCCUGGCAUGCUGAUU..............................................  476       1.49
.......UGGGUUCCUGGCAUGCUGAU...............................................  227       0.766
.......UGGGUUCCUGGCAUGCUGA................................................  36        0.129
.......UGGGUUCCUGGCAUGCUGAUUUG............................................  5         0.02
.......UGGGUUCCUGGCAUGCUGAUUUGU...........................................  1         0.00305
........GGGUUCCUGGCAUGCUGAUUU.............................................  9711      28.7
........GGGUUCCUGGCAUGCUGAUU..............................................  1823      5.65
........GGGUUCCUGGCAUGCUGAU...............................................  722       1.97
........GGGUUCCUGGCAUGCUGAUUUG............................................  187       0.539
........GGGUUCCUGGCAUGCUGA................................................  101       0.303
........GGGUUCCUGGCAUGCUGAUUUGU...........................................  26        0.0792
.........GGUUCCUGGCAUGCUGAUUU.............................................  16        0.0413
.........GGUUCCUGGCAUGCUGAUU..............................................  1         0.00341
..........GUUCCUGGCAUGCUGAUUU.............................................  2         0.00523
............................UGUGACUUGAGAUUAAAA............................  10        0.0516
............................UGUGACUUGAGAUUAAAAUC..........................  3         0.0132
............................UGUGACUUGAGAUUAAAAU...........................  2         0.0224
.............................GUGACUUGAGAUUAAAA............................  2         0.00514
........................................UUAAAAUCACAUUGCCAGGGAU............  1         0.0112
..........................................AAAAUCACAUUGCCAGGGAUUACCA.......  33        0.323
..........................................AAAAUCACAUUGCCAGGGAUU...........  4         0.0208
..........................................AAAAUCACAUUGCCAGGGAUUACC........  2         0.0213
..........................................AAAAUCACAUUGCCAGGGAUUACCAC......  2         0.019
..........................................AAAAUCACAUUGCCAGGGAUUA..........  1         0.00238
...........................................AAAUCACAUUGCCAGGGAUUACCAC......  47        0.186
...........................................AAAUCACAUUGCCAGGGAUUACCA.......  24        0.132
...........................................AAAUCACAUUGCCAGGGAUUACC........  10        0.0953
...........................................AAAUCACAUUGCCAGGGAU............  4         0.0102
...........................................AAAUCACAUUGCCAGGGA.............  3         0.0255
...........................................AAAUCACAUUGCCAGGGAUU...........  3         0.0263
...........................................AAAUCACAUUGCCAGGGAUUAC.........  2         0.00592
...........................................AAAUCACAUUGCCAGGGAUUA..........  1         0.00202
............................................AAUCACAUUGCCAGGGAUUACCA.......  286       2.55
............................................AAUCACAUUGCCAGGGAUU...........  223       1.39
............................................AAUCACAUUGCCAGGGAUUACC........  195       1.55
............................................AAUCACAUUGCCAGGGAUUAC.........  165       1.16
............................................AAUCACAUUGCCAGGGAUUACCAC......  155       1.37
............................................AAUCACAUUGCCAGGGAUUA..........  150       0.438
............................................AAUCACAUUGCCAGGGAU............  63        0.407
............................................AAUCACAUUGCCAGGGA.............  17        0.176
............................................AAUCACAUUGCCAGGGAUUACCACG.....  1         0.00741
.............................................AUCACAUUGCCAGGGAUUACCAC......  65427     407
.............................................AUCACAUUGCCAGGGAUUACCA.......  54022     253
.............................................AUCACAUUGCCAGGGAUUACC........  29757     238
.............................................AUCACAUUGCCAGGGAUUA..........  28715     92.8
.............................................AUCACAUUGCCAGGGAUUAC.........  22802     115
.............................................AUCACAUUGCCAGGGAUU...........  10931     55.6
.............................................AUCACAUUGCCAGGGAU............  714       11.3
.............................................AUCACAUUGCCAGGGAUUACCACG.....  339       2.64
.............................................AUCACAUUGCCAGGGAUUACCACGC....  28        0.0843
.............................................AUCACAUUGCCAGGGAUUACCACGCA...  2         0.00492
..............................................UCACAUUGCCAGGGAUUACCAC......  3294      16.2
..............................................UCACAUUGCCAGGGAUUACCA.......  1298      5.93
..............................................UCACAUUGCCAGGGAUUACC........  493       3.91
..............................................UCACAUUGCCAGGGAUUAC.........  415       2.69
..............................................UCACAUUGCCAGGGAUUACCACG.....  23        0.0808
..............................................UCACAUUGCCAGGGAUU...........  21        0.0957
..............................................UCACAUUGCCAGGGAUUA..........  14        0.112
...............................................CACAUUGCCAGGGAUUACCAC......  60        0.517
...............................................CACAUUGCCAGGGAUUACC........  40        0.378
...............................................CACAUUGCCAGGGAUUACCA.......  26        0.199
...............................................CACAUUGCCAGGGAUUAC.........  3         0.00682
...............................................CACAUUGCCAGGGAUUA..........  1         0.0127
................................................ACAUUGCCAGGGAUUACCAC......  1051      8.3
................................................ACAUUGCCAGGGAUUACCA.......  609       4.4
................................................ACAUUGCCAGGGAUUACC........  388       3.39
................................................ACAUUGCCAGGGAUUAC.........  142       1.72
................................................ACAUUGCCAGGGAUUACCACG.....  2         0.0193
.................................................CAUUGCCAGGGAUUACCAC......  51        0.566
.................................................CAUUGCCAGGGAUUACCA.......  26        0.513
.................................................CAUUGCCAGGGAUUACC........  16        0.264
..................................................AUUGCCAGGGAUUACCAC......  1177      15.3
..................................................AUUGCCAGGGAUUACCA.......  700       12.1
..................................................AUUGCCAGGGAUUACCACG.....  8         0.0827
...................................................UUGCCAGGGAUUACCAC......  640       9.01
...................................................UUGCCAGGGAUUACCACG.....  2         0.0197
GGCUGCUUGGGUUCCUGGCAUGCUGAUUUGUGACUUGAGAUUAAAAUCACAUUGCCAGGGAUUACCACGCAACC
((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).)) (-28.94)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 12ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 1109ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 797ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 82ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 71testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 438testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 494testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 49testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 940brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 4490brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 5076brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 591brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 24997brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 140whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 1320whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 1190whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 202whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 4010whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 5669whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 6523whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 5735whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 5686whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 5758whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 5357whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 25936whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 541embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 3244embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 3641embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 429embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 769embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 2680embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 2752embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 199embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 2702embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 8410embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 9646embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 3852bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 3966bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 3766spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 4135spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 16666spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 2819spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 5215spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 4629spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 2332spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 14521peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 1205spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 1304lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 1643lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 15633bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 11841bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 102882bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 24829peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 6016peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 9496bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 10586bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 13137spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 3079thymus GEO : GSM539856
ER0000000238 6536spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 21714spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 8851spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 40667lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 32850lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 42009lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 49489spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 36568lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 26255lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 3378 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 19250 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 1484heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 4447brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 10104lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 995liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 7720kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 4733pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 25162skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 5387skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 8769salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 261testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 4106ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 2647spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 5182lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).