Deep sequencing reads for mature sequence MIMAT0015548

Stem-loop ID bmo-mir-3362
Mature ID bmo-miR-3362
Reads
                   bmo-miR-3362                                                                                 Count     RPM (mean number of reads per million)
........UGUGAUGCUGAUUUGAAGUUU..................................................................................  1         0.233
..............GCUGAUUUGAAGUUUAUGAAUGU..........................................................................  6         2.03
..............GCUGAUUUGAAGUUUAUGAAUGUUGUA......................................................................  1         0.233
..............GCUGAUUUGAAGUUUAUGAAUGUUG........................................................................  1         0.233
..............GCUGAUUUGAAGUUUAUGAAUGUUGU.......................................................................  1         0.233
..............GCUGAUUUGAAGUUUAUGAAUGUUGUAG.....................................................................  1         0.233
................UGAUUUGAAGUUUAUGAAUG...........................................................................  17        3.97
................UGAUUUGAAGUUUAUGAAUGUUGUAGC....................................................................  8         3.12
................UGAUUUGAAGUUUAUGAAUGUUGUAGCC...................................................................  5         1.17
................UGAUUUGAAGUUUAUGAAUGUUGUA......................................................................  3         0.694
................UGAUUUGAAGUUUAUGAAUGUUGUAG.....................................................................  3         0.7
................UGAUUUGAAGUUUAUGAA.............................................................................  1         0.227
................UGAUUUGAAGUUUAUGAAU............................................................................  1         0.233
................UGAUUUGAAGUUUAUGAAUGUUGUAGCCC..................................................................  1         0.233
.................GAUUUGAAGUUUAUGAAUGUUGUAGCC...................................................................  1         0.233
.....................UGAAGUUUAUGAAUGUUGUAGCCCGGU...............................................................  2         0.467
.....................UGAAGUUUAUGAAUGUUGUAGCCCGGUG..............................................................  1         0.233
..........................UUUAUGAAUGUUGUAGCCCG.................................................................  1         0.233
...........................UUAUGAAUGUUGUAGCCCGG................................................................  1         0.861
............................UAUGAAUGUUGUAGCCCGG................................................................  1         0.233
.............................AUGAAUGUUGUAGCCCGGUG..............................................................  1         0.233
...............................................................................UAAUAAUUCUAUUUUAAGAGGUUUUAUA....  1         0.227
AAGCCGUUUGUGAUGCUGAUUUGAAGUUUAUGAAUGUUGUAGCCCGGUGGCCUGGUUCUGCACAUGAUGCUACUAUAUUUAAUAAUUCUAUUUUAAGAGGUUUUAUAGACA
.....((((((((.(((..((((((((((((((((((.(((((...(((((........)).)))...))))).)))))).))))....)))))))).))).)))))))). (-26.30)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000268 14whole body GEO : GSM449725 5th-instar day-3 larvae [ Liu S et al.]
ER0000000269 59anterior silk glands GEO : GSM449726 5th-instar day-3 larvae [ Liu S et al.]
ER0000000270 4posterior silk glands GEO : GSM449727 5th-instar day-3 larvae [ Liu S et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).