Deep sequencing reads for mature sequence MIMAT0015284

Stem-loop ID

osa-MIR1317

Mature ID

osa-miR1317-5p.2-5p

Reads

                 osa-miR1317-5p.2-5p         osa-miR1317-5p                                                            osa-miR1317-3p                               Count     RPM (mean number of reads per million)
.....................AGAUUGCUUUCAAGGUCAUUUCUU....................................................................................................................  4         94.7
.....................AGAUUGCUUUCAAGGUCAUUUCU.....................................................................................................................  1         30
......................GAUUGCUUUCAAGGUCAUUUCU.....................................................................................................................  2         60
.............................................UAGGGAACCCCAUUCCCAUAAA..............................................................................................  1         23.7
UAUUAUCGUUACCAAUAUCCUAGAUUGCUUUCAAGGUCAUUUCUUUAGGGAACCCCAUUCCCAUAAAUUCAGUAUCCAAAGCUGGUUGCUGUAUCUAUGGGAAUAAGGGUUCCCUUACGAAAUGAUCUUGGACGUAAUCUAGGAGUUUGCUGACGAUAAUG
(((((((((((.(((..(((((((((((.((((((((((((((...(((((((((.(((((((((.((.(((((.(((....))).))))).)).)))))))))..)))))))))...)))))))))))))).)))))))))))..))).))))))))))) (-89.00)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000008	3	whole body	GEO : GSM407071		[ Johnson C et al.]
ER0000000009	5	whole body	GEO : GSM407072		[ Johnson C et al.]

References

1. PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).