Deep sequencing reads for mature sequence MIMAT0015036

Stem-loop ID

hsa-mir-3162

Mature ID

hsa-miR-3162-5p

Reads

        hsa-miR-3162-5p                          hsa-miR-3162-3p                    Count     RPM (mean number of reads per million)
.........UUAGGGAGUAGAAGGGUGGGGA...................................................  2         0.168
...........AGGGAGUAGAAGGGUGGGGAGCA................................................  2         0.0677
...........AGGGAGUAGAAGGGUGGGGAG..................................................  2         0.168
CUGACUUUUUUAGGGAGUAGAAGGGUGGGGAGCAUGAACAAUGUUUCUCACUCCCUACCCCUCCACUCCCCAAAAAAGUCAG
(((((((((((.((((((.((.((((((((((...(((......)))...)))))))))).)).)))))).))))))))))) (-47.60)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000103	2	melanoblast	GEO : GSM458535		[ Stark MS et al.]
ER0000000108	2	melanoma	GEO : GSM458540	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000110	6	melanoma	GEO : GSM458542	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000111	4	melanoma	GEO : GSM458543	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000114	7	melanoma	GEO : GSM458546	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000158	1	squamous cell	GEO : GSM532894		[ Witten D et al.]
ER0000000188	1	squamous cell	GEO : GSM532924		[ Witten D et al.]
ER0000000189	1	whole body	GEO : GSM532925	normal cervix	[ Witten D et al.]
ER0000000190	1	squamous cell	GEO : GSM532926		[ Witten D et al.]

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).