Deep sequencing reads for mature sequence MIMAT0015034

Stem-loop ID hsa-mir-3160-1
Mature ID hsa-miR-3160-3p
Reads 
           hsa-miR-3160-5p                          hsa-miR-3160-3p                     Count     RPM (mean number of reads per million)
.....................................................AGAGCUGAGACUAGAAAGCCCA..........  4         0.332
GGACCUGCCCUGGGCUUUCUAGUCUCAGCUCUCCUCCAGCUCAGCUGGUCAGGAGAGCUGAGACUAGAAAGCCCAGGGCAGGUUC
((((((((((((((((((((((((((((((((((((((((...)))))..))))))))))))))))))))))))))))))))))) (-81.50)
Stem-loop ID hsa-mir-3160-2
Mature ID hsa-miR-3160-3p
Reads 
         hsa-miR-3160-5p                          hsa-miR-3160-3p                   Count     RPM (mean number of reads per million)
...................................................AGAGCUGAGACUAGAAAGCCCA........  4         0.332
ACCUGCCCUGGGCUUUCUAGUCUCAGCUCUCCUGACCAGCUGAGCUGGAGGAGAGCUGAGACUAGAAAGCCCAGGGCAGGU
(((((((((((((((((((((((((((((((((..(((((...)))))))))))))))))))))))))))))))))))))) (-78.20)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000103 2melanoblast GEO : GSM458535 [ Stark MS et al.]
ER0000000108 2melanoma GEO : GSM458540 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000112 2melanoma GEO : GSM458544 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000156 1squamous cell GEO : GSM532892 [ Witten D et al.]
ER0000000160 2squamous cell GEO : GSM532896 [ Witten D et al.]
ER0000000164 4squamous cell GEO : GSM532900 [ Witten D et al.]
ER0000000180 1squamous cell GEO : GSM532916 [ Witten D et al.]
ER0000000186 1squamous cell GEO : GSM532922 [ Witten D et al.]
ER0000000188 2squamous cell GEO : GSM532924 [ Witten D et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).