Deep sequencing reads for mature sequence MIMAT0014950

Stem-loop ID mmu-mir-3109
Mature ID mmu-miR-3109-3p
Reads 
              mmu-miR-3109-5p                      mmu-miR-3109-3p                        Count     RPM (mean number of reads per million)
.............AAAUGGAUGCGAUGGUUCCCAU.....................................................  1         0.00644
..............AAUGGAUGCGAUGGUUCCCAUG....................................................  80        0.464
..............AAUGGAUGCGAUGGUUCCCAU.....................................................  33        0.208
..............AAUGGAUGCGAUGGUUCCCAUGCU..................................................  22        0.143
..............AAUGGAUGCGAUGGUUCCC.......................................................  22        0.128
..............AAUGGAUGCGAUGGUUCCCAUGC...................................................  21        0.281
..............AAUGGAUGCGAUGGUUCCCA......................................................  14        0.0747
...............AUGGAUGCGAUGGUUCCCAUGCU..................................................  1         0.0206
..................GAUGCGAUGGUUCCCAUGCU..................................................  1         0.00448
...................AUGCGAUGGUUCCCAUGC...................................................  1         0.0161
....................................................CUAGGGCCAUCUCAUCCAGAUA..............  5         0.0817
....................................................CUAGGGCCAUCUCAUCCAGAU...............  2         0.0387
....................................................CUAGGGCCAUCUCAUCCAG.................  1         0.00353
.....................................................UAGGGCCAUCUCAUCCAGAUA..............  24        0.358
.....................................................UAGGGCCAUCUCAUCCAGAU...............  16        0.353
.....................................................UAGGGCCAUCUCAUCCAGA................  2         0.021
UGCCUGCUCCUGUAAAUGGAUGCGAUGGUUCCCAUGCUGUUCUGAGGCAGAGCUAGGGCCAUCUCAUCCAGAUACUGUGGAGAUGGUA
((((..((((.(((..((((((.((((((((.....((((......)))).....)))))))).))))))..)))...))))..)))) (-38.30)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 1ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000034 2testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000038 1brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000040 1brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000042 1whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000045 1whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 2whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 2whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 1whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 3whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 1whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000052 6whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000054 3embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 1embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 1embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 7embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 4embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 4embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 3embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 2embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000220 1spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000224 1spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 2peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 1lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 1bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000231 19bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 28peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 5peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 4bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000236 15spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 7thymus GEO : GSM539856
ER0000000239 6spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 1spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 30lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 14lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 18lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 24spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 1lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000247 4 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 6 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000251 2lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000255 6skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 2skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 3salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 1testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 1ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000261 2lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).