Deep sequencing reads for mature sequence MIMAT0014883

Stem-loop ID mmu-mir-466m
Mature ID mmu-miR-466m-3p
Reads 
             mmu-miR-466m-5p                    mmu-miR-466m-3p                       Count     RPM (mean number of reads per million)
.........UCUUGUGUGUGCAUGUGCAUGUGU...................................................  1         0.0409
.........UCUUGUGUGUGCAUGUGCAUG......................................................  1         0.00833
..........CUUGUGUGUGCAUGUGCAUGUGU...................................................  3         0.0115
............UGUGUGUGCAUGUGCAUGU.....................................................  1         0.0117
..............UGUGUGCAUGUGCAUGUGUGUAU...............................................  35        0.655
..............UGUGUGCAUGUGCAUGUGUGUAUA..............................................  17        0.559
..............UGUGUGCAUGUGCAUGUGUGUA................................................  7         0.243
..............UGUGUGCAUGUGCAUGU.....................................................  6         0.0693
..............UGUGUGCAUGUGCAUGUGUGUAUAU.............................................  3         0.0557
..............UGUGUGCAUGUGCAUGUGU...................................................  1         0.0113
..............UGUGUGCAUGUGCAUGUGUGUAUAUG............................................  1         0.0117
..............UGUGUGCAUGUGCAUGUGUGU.................................................  1         0.0113
...............GUGUGCAUGUGCAUGUGUGUAUAU.............................................  16        0.283
...............GUGUGCAUGUGCAUGUGUGUAU...............................................  10        0.232
...............GUGUGCAUGUGCAUGUGUGUAUA..............................................  9         0.181
...............GUGUGCAUGUGCAUGUGUGU.................................................  6         0.123
...............GUGUGCAUGUGCAUGUGU...................................................  3         0.0285
...............GUGUGCAUGUGCAUGUG....................................................  1         0.0143
...............GUGUGCAUGUGCAUGUGUGUA................................................  1         0.00951
................UGUGCAUGUGCAUGUGU...................................................  2         0.0259
....................CAUGUGCAUGUGUGUAUAUGAAU.........................................  1         0.00366
.....................AUGUGCAUGUGUGUAUA..............................................  1         0.0117
...............................................AUAUACAUACACACAUA....................  1         0.0724
................................................UAUACAUACACACAUAC...................  1         0.0143
.................................................AUACAUACACACAUACACACGC.............  1         0.00281
..................................................UACAUACACACAUACACACGCA............  82        0.374
..................................................UACAUACACACAUACACACGC.............  46        0.197
....................................................CAUACACACAUACACACGCACG..........  6         0.0226
.....................................................AUACACACAUACACACGCACGUA........  1         0.00366
.....................................................AUACACACAUACACACGCACGU.........  1         0.00534
.....................................................AUACACACAUACACACGCACG..........  1         0.00361
UGUGUGUGUUCUUGUGUGUGCAUGUGCAUGUGUGUAUAUGAAUAUACAUAUACAUACACACAUACACACGCACGUACACACACA
.((((((((.(.((((((((.(((((..((((((((((((......))))))))))))))))).)))))))).).)))))))). (-45.90)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000030 4ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000032 3testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 18testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 14testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 2testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 6brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 13brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 19brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 3brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 82brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000042 2whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 2whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000045 5whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 9whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 11whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 9whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 1whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 8whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 9whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 44whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 11embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 14embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 75embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 8embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 53embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 30embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 245embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 19embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 26embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 32embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 112embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 44bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 32bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 10spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 1spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 6spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 40spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 143spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 147spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 69spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000226 13spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 15lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 3lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 151bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000231 17bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 127peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 26peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 11bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 54bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 11spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 58thymus GEO : GSM539856
ER0000000238 92spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 90spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 78spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 38lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 41lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 315lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 323spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 61lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 239lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 872 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 71 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 1heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 8brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 7lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000254 11pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 12skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 19skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 19salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 30testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 8ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 53spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 19lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).