Deep sequencing reads for mature sequence MIMAT0014665

Stem-loop ID

bmo-mir-3001

Mature ID

bmo-miR-3001

Reads

                        bmo-miR-3001                                                                                     Count     RPM (mean number of reads per million)
....................UAAGUUGAAAGAAUUGUAGAUUUUGA.........................................................................  48        14.9
....................UAAGUUGAAAGAAUUGUAGAUUUUGAUU.......................................................................  20        4.57
....................UAAGUUGAAAGAAUUGUAGAUUUUGAU........................................................................  10        2.29
....................UAAGUUGAAAGAAUUGUA.................................................................................  4         0.909
....................UAAGUUGAAAGAAUUGUAGAUUUUG..........................................................................  3         0.688
....................UAAGUUGAAAGAAUUGUAGA...............................................................................  3         0.694
....................UAAGUUGAAAGAAUUGUAG................................................................................  1         0.227
.....................AAGUUGAAAGAAUUGUAGAUUUUGA.........................................................................  2         1.09
...........................AAAGAAUUGUAGAUUUUGA.........................................................................  1         0.233
............................................................................UUGAUAUUUUUCUUUUGUCUUUGGCGU................  18        5.45
............................................................................UUGAUAUUUUUCUUUUGUCUUUGGCGUC...............  7         1.62
............................................................................UUGAUAUUUUUCUUUUGUCUUUGG...................  1         0.233
............................................................................UUGAUAUUUUUCUUUUGUCUUUGGCG.................  1         0.233
............................................................................UUGAUAUUUUUCUUUUGUCUUUGGCGUCAU.............  1         0.227
...............................................................................AUAUUUUUCUUUUGUCUUUGG...................  1         0.233
GUAUGUGAUUCAGAUGCGUUUAAGUUGAAAGAAUUGUAGAUUUUGAUUCCGUUUUCGCCAAUAAAAUUCAGCAGAAUUGAUAUUUUUCUUUUGUCUUUGGCGUCAUCAAGGCCAUUAGC
............(((((((..(((.((((((((..((((((((((......(((........)))......)))))))..)))..)))))))).)))..))).))))............ (-22.40)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000268	92	whole body	GEO : GSM449725	5th-instar day-3 larvae	[ Liu S et al.]
ER0000000269	247	anterior silk glands	GEO : GSM449726	5th-instar day-3 larvae	[ Liu S et al.]
ER0000000270	16	posterior silk glands	GEO : GSM449727	5th-instar day-3 larvae	[ Liu S et al.]

References

1. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).