Deep sequencing reads for mature sequence MIMAT0013658

Stem-loop ID bmo-mir-2774a-1
Mature ID bmo-miR-2774a
Reads 
                                          bmo-miR-2774a                   Count     RPM (mean number of reads per million)
..................CGGUCUACCGAGCAAUAUCA..................................  2         0.467
....................GUCUACCGAGCAAUAUCACC................................  2         1.09
....................GUCUACCGAGCAAUAUCACCCG..............................  1         0.233
..............................CAAUAUCACCCGCUCGGUGGA.....................  1         0.233
...............................AAUAUCACCCGCUCGGUGGA.....................  5         4.31
......................................CCCGCUCGGUGGAAGAUC................  1         0.861
..........................................CUCGGUGGAAGAUCGUCCCUU.........  142       58.7
..........................................CUCGGUGGAAGAUCGUCCCUUA........  5         1.78
..........................................CUCGGUGGAAGAUCGUCC............  3         2.58
AAGACGAUAAGGGAUCGCCGGUCUACCGAGCAAUAUCACCCGCUCGGUGGAAGAUCGUCCCUUAAUCUUCAC
..((.(((((((((.((....((((((((((..........))))))))))....)))))))).))).)).. (-31.40)
Stem-loop ID bmo-mir-2774a-3
Mature ID bmo-miR-2774a
Reads 
                                           bmo-miR-2774a                   Count     RPM (mean number of reads per million)
.................................AUAUCACCCGCUCGGUGGAAGA..................  1         0.233
...........................................CUCGGUGGAAGAUCGUCCC...........  32        10.5
...........................................CUCGGUGGAAGAUCGUCCCUC.........  1         0.233
AAAAAAACAUUCGGACCAUCGGUCUACCGAGCAAUAUCACCCGCUCGGUGGAAGAUCGUCCCUCCGUCGUUAA
............((((.(((..((((((((((..........)))))))))).))).))))............ (-26.50)
Stem-loop ID bmo-mir-2774a-4
Mature ID bmo-miR-2774a
Reads 
                                           bmo-miR-2774a                   Count     RPM (mean number of reads per million)
..AACAACAUUCGGACCGUCGGU..................................................  1         0.233
....CAACAUUCGGACCGUCGGU..................................................  1         0.233
.....AACAUUCGGACCGUCGGUCU................................................  1         0.861
........AUUCGGACCGUCGGUCUACC.............................................  1         0.861
.........................................UGCUCGGUGGAAGAUCGUCCCU..........  4         2.19
.........................................UGCUCGGUGGAAGAUCGUCCC...........  1         0.861
...........................................CUCGGUGGAAGAUCGUCCCU..........  148       61.8
ACAACAACAUUCGGACCGUCGGUCUACCGAGCAAUAUUACCUGCUCGGUGGAAGAUCGUCCCUUUGUCGUAUA
...((.(((...((((.(((..(((((((((((........))))))))))).))).))))...))).))... (-31.60)
Stem-loop ID bmo-mir-2774a-2
Mature ID bmo-miR-2774a
Reads 
                                           bmo-miR-2774a                   Count     RPM (mean number of reads per million)
ACAACAACAUUCGGACCGUCGGU..................................................  1         0.233
...ACAACAUUCGGACCGUCGGUC.................................................  1         0.233
....CAACAUUCGGACCGUCGGUC.................................................  2         1.09
............GGACCGUCGGUCUACCGAGCAA.......................................  14        6.41
............GGACCGUCGGUCUACCGAGCA........................................  11        3.19
............GGACCGUCGGUCUACCGAGC.........................................  10        6.1
.............GACCGUCGGUCUACCGAGCAAU......................................  3         0.7
........................UACCGAGCAAUAUCACCCGC.............................  1         0.233
...............................CAAUAUCACCCGCUCGGUGG......................  1         0.233
...........................................CUCGGUGGAAGAUCGUCCCUUU........  49        19.5
ACAACAACAUUCGGACCGUCGGUCUACCGAGCAAUAUCACCCGCUCGGUGGAAGAUCGUCCCUUUGUCAUUAU
......(((...((((.(((..((((((((((..........)))))))))).))).))))...)))...... (-27.90)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000268 64whole body GEO : GSM449725 5th-instar day-3 larvae [ Liu S et al.]
ER0000000269 93anterior silk glands GEO : GSM449726 5th-instar day-3 larvae [ Liu S et al.]
ER0000000270 61posterior silk glands GEO : GSM449727 5th-instar day-3 larvae [ Liu S et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).