Deep sequencing reads for mature sequence MIMAT0012621

Stem-loop ID bmo-mir-9c
Mature ID bmo-miR-9c-3p
Reads
                         bmo-miR-9c-5p                       bmo-miR-9c-3p                                     Count     RPM (mean number of reads per million)
.......CCGAGGGUCGCGGGCCGUC..................................................................................  7         5.4
........CGAGGGUCGCGGGCCGUC..................................................................................  12        4.68
........................UCUCUUUGGUAUCCUAGCUGUAG.............................................................  1         0.233
.........................CUCUUUGGUAUCCUAGCU.................................................................  12        3.43
.........................CUCUUUGGUAUCCUAGCUG................................................................  7         2.26
.........................CUCUUUGGUAUCCUAGCUGUAG.............................................................  6         1.4
.........................CUCUUUGGUAUCCUAGCUGUAGG............................................................  3         0.7
.........................CUCUUUGGUAUCCUAGCUGU...............................................................  2         1.09
.........................CUCUUUGGUAUCCUAGCUGUA..............................................................  2         0.467
..........................UCUUUGGUAUCCUAGCUGUAG.............................................................  4434      1.5e+03
..........................UCUUUGGUAUCCUAGCUG................................................................  4430      1.83e+03
..........................UCUUUGGUAUCCUAGCUGUAGG............................................................  3285      1.08e+03
..........................UCUUUGGUAUCCUAGCUGU...............................................................  1288      486
..........................UCUUUGGUAUCCUAGCUGUA..............................................................  590       210
..........................UCUUUGGUAUCCUAGCUGUAGGCGUG........................................................  1         0.227
..........................UCUUUGGUAUCCUAGCUGUAGGC...........................................................  1         0.233
...........................CUUUGGUAUCCUAGCUGUAG.............................................................  10        2.33
...........................CUUUGGUAUCCUAGCUGUAGG............................................................  5         1.8
...........................CUUUGGUAUCCUAGCUGU...............................................................  5         1.8
...........................CUUUGGUAUCCUAGCUGUA..............................................................  2         0.467
............................UUUGGUAUCCUAGCUGUAG.............................................................  19        6.92
............................UUUGGUAUCCUAGCUGUAGG............................................................  7         2.26
............................UUUGGUAUCCUAGCUGUA..............................................................  4         1.56
.............................UUGGUAUCCUAGCUGUAG.............................................................  6         1.39
.............................UUGGUAUCCUAGCUGUAGG............................................................  2         1.09
...........................................................CUAAAGUUAUGGUACCGAAGUUA..........................  5         1.17
............................................................UAAAGUUAUGGUACCGAAGUUA..........................  8183      2.45e+03
............................................................UAAAGUUAUGGUACCGAAGUU...........................  737       261
............................................................UAAAGUUAUGGUACCGAAGU............................  27        8.19
............................................................UAAAGUUAUGGUACCGAAGUUAC.........................  17        3.97
............................................................UAAAGUUAUGGUACCGAAG.............................  7         1.63
............................................................UAAAGUUAUGGUACCGAA..............................  3         0.7
.............................................................AAAGUUAUGGUACCGAAGUUA..........................  21        7.41
.............................................................AAAGUUAUGGUACCGAAGUU...........................  1         0.233
..............................................................AAGUUAUGGUACCGAAGUUA..........................  4         2.19
...............................................................AGUUAUGGUACCGAAGUUA..........................  2         0.467
..................................................................................CGGCUCGUGACGUAUCAGU.......  1         0.233
CAGCGCGCCGAGGGUCGCGGGCCGUCUCUUUGGUAUCCUAGCUGUAGGCGUGCGCGGCCCUAAAGUUAUGGUACCGAAGUUACGGCUCGUGACGUAUCAGUCGACGUC
..((((((.((..((((((((((((..((((((((((.(((((.((((.((.....)))))).))))).))))))))))..))))))))))))...)).).)).))). (-54.00)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000268 1296whole body GEO : GSM449725 5th-instar day-3 larvae [ Liu S et al.]
ER0000000269 19586anterior silk glands GEO : GSM449726 5th-instar day-3 larvae [ Liu S et al.]
ER0000000270 4228posterior silk glands GEO : GSM449727 5th-instar day-3 larvae [ Liu S et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).