Deep sequencing reads for mature sequence MIMAT0011651

Stem-loop ID ppc-mir-63c-1
Mature ID ppc-miR-63c
Reads 
                                                              ppc-miR-63c                               Count     RPM (mean number of reads per million)
...........................................................UAUGACACUCAAUGCGAGAUGGG.....................  2         218
...........................................................UAUGACACUCAAUGCGAGAUG.......................  1         109
...........................................................UAUGACACUCAAUGCGAGAUGG......................  1         109
GAAUCAUAGUCCAUGUGGGGUUCCAUUCGCAUGAGUUUCAUGGACUCGAUUCAUAGAUCUAUGACACUCAAUGCGAGAUGGGACCUCGGUGGGCCAAUGGUUC
(((((((.((((((.(((((((((((((((((((((.(((((((.((........))))))))).)))).)))))).)))))))))))))))))..))))))) (-53.00)
Stem-loop ID ppc-mir-63c-2
Mature ID ppc-miR-63c
Reads 
                                                                     ppc-miR-63c                                     Count     RPM (mean number of reads per million)
..................................................................UAUGACACUCAAUGCGAGAUGGG...........................  2         218
..................................................................UAUGACACUCAAUGCGAGAUG.............................  1         109
..................................................................UAUGACACUCAAUGCGAGAUGG............................  1         109
GGUACCCGAACCAUAAUCCAUGCGGGGUUCCAUUCGCAUGAGUUUCAUGGACUCGAUUCAUAGAUCUAUGACACUCAAUGCGAGAUGGGACCUCGGUGGACCAAUGGUUCGGUACC
((((((.(((((((..(((((.(((((((((((((((((((((.(((((((.((........))))))))).)))).)))))).))))))))))))))))...))))))))))))) (-66.10)
Stem-loop ID ppc-mir-63c-3
Mature ID ppc-miR-63c
Reads 
                                                                     ppc-miR-63c                                     Count     RPM (mean number of reads per million)
..................................................................UAUGACACUCAAUGCGAGAUGGG...........................  2         218
..................................................................UAUGACACUCAAUGCGAGAUG.............................  1         109
..................................................................UAUGACACUCAAUGCGAGAUGG............................  1         109
GGUACCCGAACCAUAAUCCAUGUGGGGUUCCAUUCGCAUGAGUUUCAUGGACUCGAUUCAUAGAUCUAUGACACUCAAUGCGAGAUGGGACCUCGGUGGACCAUUGGUACGGUACC
((((((.(.((((...(((((.(((((((((((((((((((((.(((((((.((........))))))))).)))).)))))).))))))))))))))))....)))).))))))) (-58.90)
Stem-loop ID ppc-mir-63c-4
Mature ID ppc-miR-63c
Reads 
                                                                     ppc-miR-63c                                     Count     RPM (mean number of reads per million)
..................................................................UAUGACACUCAAUGCGAGAUGGG...........................  2         218
..................................................................UAUGACACUCAAUGCGAGAUG.............................  1         109
..................................................................UAUGACACUCAAUGCGAGAUGG............................  1         109
GGUACCCGAACCAUAAUCCAUGUGGGGUUCCAUUCGCAUGAGUUUCAUGGACUCGAUUCAUAGAUCUAUGACACUCAAUGCGAGAUGGGACCUCGGUGGACCAAUGGUUCGGUACC
((((((.(((((((..(((((.(((((((((((((((((((((.(((((((.((........))))))))).)))).)))))).))))))))))))))))...))))))))))))) (-64.10)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000027 118whole body GEO : GSM378787 [ de Wit E et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).