Deep sequencing reads for mature sequence MIMAT0009392

Stem-loop ID mmu-mir-1929
Mature ID mmu-miR-1929-5p
Reads 
               mmu-miR-1929-5p                          mmu-miR-1929-3p                        Count     RPM (mean number of reads per million)
..............UCUUCUAGGACUUUAUAGAGCAGAG......................................................  1         0.00421
..............UCUUCUAGGACUUUAUAGAGCAGA.......................................................  1         0.00507
................UUCUAGGACUUUAUAGAGCAGAG......................................................  159       1.06
................UUCUAGGACUUUAUAGAGCAGA.......................................................  64        0.424
................UUCUAGGACUUUAUAGAGCA.........................................................  5         0.0285
................UUCUAGGACUUUAUAGAGCAG........................................................  3         0.0198
.................UCUAGGACUUUAUAGAGCAGAG......................................................  337       2.06
.................UCUAGGACUUUAUAGAGCAGA.......................................................  99        0.606
.................UCUAGGACUUUAUAGAGCAGAGG.....................................................  39        0.231
.................UCUAGGACUUUAUAGAGCAGAGGU....................................................  30        0.192
.................UCUAGGACUUUAUAGAGCA.........................................................  17        0.0993
.................UCUAGGACUUUAUAGAGCAG........................................................  6         0.0283
..................CUAGGACUUUAUAGAGCAGA.......................................................  1         0.00376
.........................................................UCAGCUCAUGGAGACCUAGGUG..............  1         0.00459
.........................................................UCAGCUCAUGGAGACCUAGGU...............  1         0.00204
..........................................................CAGCUCAUGGAGACCUAGGUG..............  6         0.026
..........................................................CAGCUCAUGGAGACCUAGGUGG.............  3         0.0269
UUAGAACUGGGAGGUCUUCUAGGACUUUAUAGAGCAGAGGUUUGCAGCCUGUGACACUCAGCUCAUGGAGACCUAGGUGGCCUUGGGUUCUGA
((((((((.(.(((((.((((((.((((((.((((.(((..(..(.....)..)..))).)))))))))).)))))).)))))).)))))))) (-42.10)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000037 1brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000046 1whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 1whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 1whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000051 2whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000055 1embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000059 1embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000216 31bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 21bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 10spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 1spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 3spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 10spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 31spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 28spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 26spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 9peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 1spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 13lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 8lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 39bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 6bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 19bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 31peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 6peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 17bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 10bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 54spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 10thymus GEO : GSM539856
ER0000000238 7spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 11spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 34spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 52lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 48lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 19lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 36spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 15lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 6lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 50 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 12 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 1heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 6brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 1lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000253 4kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 4pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 11skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 5skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 9salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 4testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 1ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 33spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 17lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).