Deep sequencing reads for mature sequence MIMAT0009198

Stem-loop ID hsa-mir-224
Mature ID hsa-miR-224-3p
Reads 
      hsa-miR-224-5p                                hsa-miR-224-3p                 Count     RPM (mean number of reads per million)
....UUUCAAGUCACUAGUGGUUCCGUUU....................................................  15        1.46e+03
....UUUCAAGUCACUAGUGGUUCCGUU.....................................................  7         565
....UUUCAAGUCACUAGUGGUUCCGUUUAG..................................................  6         274
....UUUCAAGUCACUAGUGGUUCCGUUUA...................................................  2         89.2
....UUUCAAGUCACUAGUGGUUCC........................................................  1         15.5
....UUUCAAGUCACUAGUGGUUCCGU......................................................  1         72.8
......UCAAGUCACUAGUGGUUCCGUUUA...................................................  2         0.03
.......CAAGUCACUAGUGGUUCCGUUUAG..................................................  413       12.3
.......CAAGUCACUAGUGGUUCCGUUU....................................................  198       111
.......CAAGUCACUAGUGGUUCCGUUUA...................................................  160       4.17
.......CAAGUCACUAGUGGUUCCGUUUAGU.................................................  17        1.17
.......CAAGUCACUAGUGGUUCCGUU.....................................................  3         38.8
........AAGUCACUAGUGGUUCCGUUUAG..................................................  3         0.045
....................................................AAAAUGGUGCCCUAGUGACUAC.......  1         9.44
.....................................................AAAUGGUGCCCUAGUGACUACA......  2         0.0635
.....................................................AAAUGGUGCCCUAGUGACUAC.......  1         9.44
GGGCUUUCAAGUCACUAGUGGUUCCGUUUAGUAGAUGAUUGUGCAUUGUUUCAAAAUGGUGCCCUAGUGACUACAAAGCCC
(((((((..(((((((((.(((.((((((.(.(((..((.....))..)))).)))))).))))))))))))..))))))) (-36.60)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000001 8embryonic stem cell GEO : GSM541796 [ Bar M et al.]
ER0000000002 21embryonic stem cell GEO : GSM541797 [ Bar M et al.]
ER0000000104 8melanocyte GEO : GSM458536 [ Stark MS et al.]
ER0000000105 705 GEO : GSM458537 cell line: primary giant congental nevus [ Stark MS et al.]
ER0000000110 110melanoma GEO : GSM458542 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000114 5melanoma GEO : GSM458546 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000136 2squamous cell GEO : GSM532872 [ Witten D et al.]
ER0000000142 7squamous cell GEO : GSM532878 [ Witten D et al.]
ER0000000144 1squamous cell GEO : GSM532880 [ Witten D et al.]
ER0000000148 1squamous cell GEO : GSM532884 [ Witten D et al.]
ER0000000154 1squamous cell GEO : GSM532890 [ Witten D et al.]
ER0000000155 1 GEO : GSM532891 normal cervix [ Witten D et al.]
ER0000000162 7squamous cell GEO : GSM532898 [ Witten D et al.]
ER0000000172 5squamous cell GEO : GSM532908 [ Witten D et al.]
ER0000000176 12adenosquamous cell GEO : GSM532912 [ Witten D et al.]
ER0000000177 2 GEO : GSM532913 normal cervix [ Witten D et al.]
ER0000000182 2squamous cell GEO : GSM532918 [ Witten D et al.]
ER0000000184 10squamous cell GEO : GSM532920 [ Witten D et al.]
ER0000000188 2squamous cell GEO : GSM532924 [ Witten D et al.]
ER0000000189 12whole body GEO : GSM532925 normal cervix [ Witten D et al.]
ER0000000190 12squamous cell GEO : GSM532926 [ Witten D et al.]
ER0000000264 15 GEO : GSM368181 tissue: undifferentiated NPC [ Zhu JY et al.]
ER0000000265 1 GEO : GSM368182 tissue: clinically negative of NPC [ Zhu JY et al.]
ER0000000266 9 GEO : GSM368183 tissue: undifferentiated NPC [ Zhu JY et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).
2
PMID:19144710 "Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas" Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G J Virol. 83:3333-3341(2009).
3
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
4
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).