Deep sequencing reads for mature sequence MIMAT0008383

Stem-loop ID

tca-mir-279a

Mature ID

tca-miR-279a-3p

Reads

   tca-miR-279a-5p                       tca-miR-279a-3p            Count     RPM (mean number of reads per million)
...GAUGGGUUCGGGUCUAGUGGCACG......................................  22        2.84
...GAUGGGUUCGGGUCUAGUGGCAC.......................................  20        2.58
...GAUGGGUUCGGGUCUAGUGGC.........................................  18        2.32
...GAUGGGUUCGGGUCUAGUGGCA........................................  16        2.06
...GAUGGGUUCGGGUCUAGUGG..........................................  16        2.06
...GAUGGGUUCGGGUCUAGUG...........................................  14        1.81
...GAUGGGUUCGGGUCUAGU............................................  8         1.03
...GAUGGGUUCGGGUCUAGUGGCACGGU....................................  2         0.258
....AUGGGUUCGGGUCUAGUGG..........................................  2         0.258
.....UGGGUUCGGGUCUAGUGGC.........................................  2         0.258
.....UGGGUUCGGGUCUAGUGGCACG......................................  2         0.258
.......GGUUCGGGUCUAGUGGCAC.......................................  2         0.258
.......................................UCGUGACUAGAUCCACACUCAUU...  8         17.5
.......................................UCGUGACUAGAUCCACACUCA.....  4         0.516
.......................................UCGUGACUAGAUCCACACUCAU....  4         17
........................................CGUGACUAGAUCCACACUCA.....  4         0.516
.........................................GUGACUAGAUCCACACUCA.....  16        2.06
.........................................GUGACUAGAUCCACACUCAU....  12        34.5
.........................................GUGACUAGAUCCACACUC......  6         0.774
.........................................GUGACUAGAUCCACACUCAUU...  6         0.774
..........................................UGACUAGAUCCACACUCAUU...  12148     3.41e+03
..........................................UGACUAGAUCCACACUCA.....  11704     7.64e+03
..........................................UGACUAGAUCCACACUCAU....  4704      2.12e+03
..........................................UGACUAGAUCCACACUCAUUA..  630       452
..........................................UGACUAGAUCCACACUCAUUAA.  512       280
...........................................GACUAGAUCCACACUCAUU...  1192      434
...........................................GACUAGAUCCACACUCAU....  320       74.2
...........................................GACUAGAUCCACACUCAUUA..  58        24
...........................................GACUAGAUCCACACUCAUUAA.  28        3.61
............................................ACUAGAUCCACACUCAUU...  24        19.6
CUUGAUGGGUUCGGGUCUAGUGGCACGGUUUUUUCAACUUCGUGACUAGAUCCACACUCAUUAAG
((((((((((..(((((((((.((..((((.....))))..)).)))))))))..)))))))))) (-28.40)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000199	95988	adult	GEO : GSM639446	genotype: wild type, gender: male and female	[ Marco A et al.]
ER0000000200	7948	embryo	GEO : GSM639447	genotype: wild type, age: 0-5 days, gender: male and female	[ Marco A et al.]

References

1. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).