Deep sequencing reads for mature sequence MIMAT0005858

Stem-loop ID

mmu-mir-1197

Mature ID

mmu-miR-1197-3p

Reads

                                          mmu-miR-1197-5p                    mmu-miR-1197-3p                              Count     RPM (mean number of reads per million)
............................................CGGUUGACCAUGGUGUGUACG.......................................................  6         0.197
......................................................................UUUAUGACGUAGGACACAUGGUC...........................  3         0.039
......................................................................UUUAUGACGUAGGACACA................................  1         0.00917
.......................................................................UUAUGACGUAGGACACAUGGUCUACU.......................  2         0.0485
.......................................................................UUAUGACGUAGGACACAUGGUCU..........................  2         0.0276
.......................................................................UUAUGACGUAGGACACAUGGUC...........................  1         0.0184
........................................................................UAUGACGUAGGACACAUGGUCUAC........................  1         0.0184
........................................................................UAUGACGUAGGACACAUGGUCU..........................  1         0.00539
.............................................................................CGUAGGACACAUGGUCUACUUCU....................  2         0.049
.............................................................................CGUAGGACACAUGGUCUACUUCUUC..................  1         0.00978
..............................................................................GUAGGACACAUGGUCUACUUCU....................  1         0.00639
...............................................................................UAGGACACAUGGUCUACUUCU....................  453       12.5
...............................................................................UAGGACACAUGGUCUACUUC.....................  28        0.454
...............................................................................UAGGACACAUGGUCUACUUCUU...................  24        0.438
...............................................................................UAGGACACAUGGUCUACUU......................  7         0.113
...............................................................................UAGGACACAUGGUCUACUUCUUC..................  3         0.0302
...............................................................................UAGGACACAUGGUCUACU.......................  2         0.021
...............................................................................UAGGACACAUGGUCUAC........................  1         0.0257
...............................................................................UAGGACACAUGGUCUACUUCUUCU.................  1         0.00539
................................................................................AGGACACAUGGUCUACUUCU....................  1         0.00271
GUGAGCUGGAAUCAGCCAGCGUUACCUCAAGGUAUUUGAAGAUGCGGUUGACCAUGGUGUGUACGCUUUAUUUAUGACGUAGGACACAUGGUCUACUUCUUCUCAAUAUCACAUCUCGCC
(((((((((......)))))..........((((((.(((((...(((.(((((((...(.(((((.........).)))).)...))))))).))))))))..)))))).....)))). (-37.20)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000036	3	brain	GEO : GSM510440		[ Chiang HR et al.]
ER0000000037	3	brain	GEO : GSM510441		[ Chiang HR et al.]
ER0000000038	4	brain	GEO : GSM510442		[ Chiang HR et al.]
ER0000000040	30	brain	GEO : GSM510444		[ Chiang HR et al.]
ER0000000042	4	whole body	GEO : GSM510446	newborn	[ Chiang HR et al.]
ER0000000043	3	whole body	GEO : GSM510447	Newborn.	[ Chiang HR et al.]
ER0000000044	1	whole body	GEO : GSM510448	Newborn.	[ Chiang HR et al.]
ER0000000045	19	whole body	GEO : GSM510449	Newborn.	[ Chiang HR et al.]
ER0000000046	13	whole body	GEO : GSM510450	Newborn.	[ Chiang HR et al.]
ER0000000047	23	whole body	GEO : GSM510451	Newborn.	[ Chiang HR et al.]
ER0000000048	28	whole body	GEO : GSM510452	Newborn.	[ Chiang HR et al.]
ER0000000049	23	whole body	GEO : GSM510453	Newborn.	[ Chiang HR et al.]
ER0000000050	25	whole body	GEO : GSM510454	Newborn.	[ Chiang HR et al.]
ER0000000051	23	whole body	GEO : GSM510455	Newborn.	[ Chiang HR et al.]
ER0000000052	65	whole body	GEO : GSM510456	Newborn.	[ Chiang HR et al.]
ER0000000053	9	embryo	GEO : GSM510457	Day 12.5 embryo	[ Chiang HR et al.]
ER0000000054	49	embryo	GEO : GSM510458	day 12.5 embryo	[ Chiang HR et al.]
ER0000000055	55	embryo	GEO : GSM510459	day 12.5 embryo	[ Chiang HR et al.]
ER0000000056	6	embryo	GEO : GSM510460	day 12.5 embryo	[ Chiang HR et al.]
ER0000000057	1	embryo	GEO : GSM510461	day 9.5 embryo	[ Chiang HR et al.]
ER0000000058	4	embryo	GEO : GSM510462	day 9.5 embryo	[ Chiang HR et al.]
ER0000000059	3	embryo	GEO : GSM510463	day 9.5 embryo	[ Chiang HR et al.]
ER0000000224	2	spleen	GEO : GSM539843	strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225	1	peritoneal lavage	GEO : GSM539844	strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000235	2	bone marrow	GEO : GSM539854	strain: C57BL/6J, gender: male
ER0000000236	2	spleen	GEO : GSM539855	strain: RAG-/-, gender: male
ER0000000244	19	spleen	GEO : GSM539863	strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247	80		GEO : GSM539866	strain: C57BL/6-129
ER0000000248	41		GEO : GSM539867	strain: C57BL/6J, developmental stage: E13.5
ER0000000250	7	brain	GEO : GSM539869	strain: C57BL/6J, gender: male
ER0000000255	5	skin	GEO : GSM539874	strain: C57BL/6J, gender: male
ER0000000256	5	skeletal muscle	GEO : GSM539875	strain: C57BL/6J, gender: male
ER0000000257	2	salivary glands	GEO : GSM539876	strain: C57BL/6J, gender: male

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).