Deep sequencing reads for mature sequence MIMAT0005843

Stem-loop ID mmu-mir-1188
Mature ID mmu-miR-1188-5p
Reads 
                 mmu-miR-1188-5p                       mmu-miR-1188-3p                                                    Count     RPM (mean number of reads per million)
..................CUGGUGUGAGGUUGGGCCAGG.................................................................................  1         0.0156
...................UGGUGUGAGGUUGGGCCAGGA................................................................................  181       5.45
...................UGGUGUGAGGUUGGGCCAGGAU...............................................................................  74        1.26
...................UGGUGUGAGGUUGGGCCAGG.................................................................................  33        0.688
...................UGGUGUGAGGUUGGGCCAG..................................................................................  21        0.2
...................UGGUGUGAGGUUGGGCCAGGAUGA.............................................................................  4         0.0675
...................UGGUGUGAGGUUGGGCC....................................................................................  3         0.841
...................UGGUGUGAGGUUGGGCCAGGAUGAA............................................................................  1         0.00948
...................UGGUGUGAGGUUGGGCCA...................................................................................  1         0.0054
....................GGUGUGAGGUUGGGCCAGGAU...............................................................................  1         0.0178
....................GGUGUGAGGUUGGGCCAGGA................................................................................  1         0.136
......................UGUGAGGUUGGGCCAGGA................................................................................  2         0.044
.......................................................UCCGAGGCUCCCCACCACACCCUGC........................................  1         0.0222
.......................................................UCCGAGGCUCCCCACCACACCCUG.........................................  1         0.0926
.........................................................CGAGGCUCCCCACCACACCCUGC........................................  1         0.0204
AUACUCACAGUCUCCCAGCUGGUGUGAGGUUGGGCCAGGAUGAAACCCAAGGCUCUCCGAGGCUCCCCACCACACCCUGCUGCUGAAGACUGCCUAGCAAGGCUGUGCCGAGUGGUGUGG
.(((((..((((((.((((.((((((..(..(((((.(((.((..(....)..)))))..)))))..)..))))))..))))..).)))))((((....))))......)))))...... (-44.20)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000036 1brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 4brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 8brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 2brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 35brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 3whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 4whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 9whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 2whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 23whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 32whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 34whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 34whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 43whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 37whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 39whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 88whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 5embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 9embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 15embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 4embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 1embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 4embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 2embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 3embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 1embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000220 1spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 1spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000235 4bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 17spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000244 7spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 25 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 20 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000250 33brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 1lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000253 1kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000255 1skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 1skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000260 1spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).