miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0005520
Stem-loop ID	dme-mir-1000
Mature ID	dme-miR-1000-5p
Reads	dme-miR-1000-5p dme-miR-1000-3p Count RPM (mean number of reads per million) ..............AUAUUGUCCUGUCACAGCAGU................................................................. 4798 261 ..............AUAUUGUCCUGUCACAGCAGUA................................................................ 3555 357 ..............AUAUUGUCCUGUCACAGCAG.................................................................. 1124 35 ..............AUAUUGUCCUGUCACAGCAGUAU............................................................... 89 2.61 ..............AUAUUGUCCUGUCACAGCA................................................................... 51 1.95 ..............AUAUUGUCCUGUCACAGC.................................................................... 12 1.03 ..............AUAUUGUCCUGUCACAGCAGUAUUGUA........................................................... 1 0.0941 ...............UAUUGUCCUGUCACAGCAGUA................................................................ 50 4.54 ...............UAUUGUCCUGUCACAGCAGU................................................................. 44 3.77 ...............UAUUGUCCUGUCACAGCAG.................................................................. 12 0.569 ...............UAUUGUCCUGUCACAGCAGUAU............................................................... 1 0.0468 ................AUUGUCCUGUCACAGCAGU................................................................. 14 0.293 ................AUUGUCCUGUCACAGCAGUA................................................................ 6 1.89 ................AUUGUCCUGUCACAGCAG.................................................................. 1 0.0216 .................UUGUCCUGUCACAGCAGUA................................................................ 2 0.0808 ....................................UUGUAACACUAUAUUAUAGUUUA......................................... 14 0.432 .........................................................UACUGCUGGGUCGGGGCAUUA...................... 1 0.234 ..........................................................ACUGCUGGGUCGGGGCAUUAACA................... 1 0.0529 ...........................................................CUGCUGGGUCGGGGCAUUAACA................... 772 63.5 ...........................................................CUGCUGGGUCGGGGCAUUAAC.................... 115 14 ...........................................................CUGCUGGGUCGGGGCAUUAA..................... 42 2.45 ...........................................................CUGCUGGGUCGGGGCAUU....................... 14 0.337 ...........................................................CUGCUGGGUCGGGGCAUUA...................... 7 1.28 ............................................................UGCUGGGUCGGGGCAUUAACA................... 1 0.0529 GACGCUUGCCAUUGAUAUUGUCCUGUCACAGCAGUAUUGUAACACUAUAUUAUAGUUUACUGCUGGGUCGGGGCAUUAACAUUGUUGAGCGUCAUUAGCA (((((((..((.((.((.(((((((.(.((((((((((((((.......)))))))..))))))).).))))))).)).)).))..)))))))....... (-41.30)

            dme-miR-1000-5p                              dme-miR-1000-3p                              Count     RPM (mean number of reads per million)
..............AUAUUGUCCUGUCACAGCAGU.................................................................  4798      261
..............AUAUUGUCCUGUCACAGCAGUA................................................................  3555      357
..............AUAUUGUCCUGUCACAGCAG..................................................................  1124      35
..............AUAUUGUCCUGUCACAGCAGUAU...............................................................  89        2.61
..............AUAUUGUCCUGUCACAGCA...................................................................  51        1.95
..............AUAUUGUCCUGUCACAGC....................................................................  12        1.03
..............AUAUUGUCCUGUCACAGCAGUAUUGUA...........................................................  1         0.0941
...............UAUUGUCCUGUCACAGCAGUA................................................................  50        4.54
...............UAUUGUCCUGUCACAGCAGU.................................................................  44        3.77
...............UAUUGUCCUGUCACAGCAG..................................................................  12        0.569
...............UAUUGUCCUGUCACAGCAGUAU...............................................................  1         0.0468
................AUUGUCCUGUCACAGCAGU.................................................................  14        0.293
................AUUGUCCUGUCACAGCAGUA................................................................  6         1.89
................AUUGUCCUGUCACAGCAG..................................................................  1         0.0216
.................UUGUCCUGUCACAGCAGUA................................................................  2         0.0808
....................................UUGUAACACUAUAUUAUAGUUUA.........................................  14        0.432
.........................................................UACUGCUGGGUCGGGGCAUUA......................  1         0.234
..........................................................ACUGCUGGGUCGGGGCAUUAACA...................  1         0.0529
...........................................................CUGCUGGGUCGGGGCAUUAACA...................  772       63.5
...........................................................CUGCUGGGUCGGGGCAUUAAC....................  115       14
...........................................................CUGCUGGGUCGGGGCAUUAA.....................  42        2.45
...........................................................CUGCUGGGUCGGGGCAUU.......................  14        0.337
...........................................................CUGCUGGGUCGGGGCAUUA......................  7         1.28
............................................................UGCUGGGUCGGGGCAUUAACA...................  1         0.0529
GACGCUUGCCAUUGAUAUUGUCCUGUCACAGCAGUAUUGUAACACUAUAUUAUAGUUUACUGCUGGGUCGGGGCAUUAACAUUGUUGAGCGUCAUUAGCA
(((((((..((.((.((.(((((((.(.((((((((((((((.......)))))))..))))))).).))))))).)).)).))..)))))))....... (-41.30)

miRBase

Deep sequencing reads for mature sequence MIMAT0005520

Filter reads

References

References
1	PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2	PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).