miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0005519
Stem-loop ID	dme-mir-999
Mature ID	dme-miR-999-3p
Reads	dme-miR-999-5p dme-miR-999-3p Count RPM (mean number of reads per million) ...GAUGCCGCUCAAUUACCCCG.................................................................................. 2 0.223 ....AUGCCGCUCAAUUACCCCG.................................................................................. 4 0.187 .....UGCCGCUCAAUUACCCCG.................................................................................. 3 0.166 .......................ACAUAGUCAUACGGUGAAUGUU............................................................ 737 32.5 .......................ACAUAGUCAUACGGUGAAUGUUG........................................................... 30 1.47 .......................ACAUAGUCAUACGGUGAAUGU............................................................. 30 1.42 .......................ACAUAGUCAUACGGUGAAU............................................................... 5 0.0385 .......................ACAUAGUCAUACGGUGAA................................................................ 3 0.116 .......................ACAUAGUCAUACGGUGAAUG.............................................................. 2 0.104 .......................ACAUAGUCAUACGGUGAAUGUUGU.......................................................... 1 0.0336 .......................ACAUAGUCAUACGGUGAAUGUUGUG......................................................... 1 0.042 .......................ACAUAGUCAUACGGUGAAUGUUGUGU........................................................ 1 0.042 ........................CAUAGUCAUACGGUGAAUGUU............................................................ 8 0.336 ........................CAUAGUCAUACGGUGAAUGUUG........................................................... 4 0.131 ...........................AGUCAUACGGUGAAUGUU............................................................ 1 0.019 ................................................UAUUGGAGACCAAUGUUAACUGU.................................. 1 0.0723 ..................................................UUGGAGACCAAUGUUAACUGUAAGACU............................ 2 0.0159 ...........................................................AAUGUUAACUGUAAGACUGUGUCU...................... 1 0.019 ............................................................AUGUUAACUGUAAGACUGUGUCU...................... 223 8.16 ............................................................AUGUUAACUGUAAGACUGUGUC....................... 12 0.207 ............................................................AUGUUAACUGUAAGACUGUGU........................ 6 0.0697 .............................................................UGUUAACUGUAAGACUGUGUCU...................... 28108 900 .............................................................UGUUAACUGUAAGACUGUGUC....................... 455 12.7 .............................................................UGUUAACUGUAAGACUGUGU........................ 142 5.15 .............................................................UGUUAACUGUAAGACUGUGUCUC..................... 31 1.53 .............................................................UGUUAACUGUAAGACUGU.......................... 23 0.475 .............................................................UGUUAACUGUAAGACUGUG......................... 19 0.267 .............................................................UGUUAACUGUAAGACUG........................... 1 0.0235 ..............................................................GUUAACUGUAAGACUGUGUCU...................... 532 12.5 ..............................................................GUUAACUGUAAGACUGUGUC....................... 14 0.983 ..............................................................GUUAACUGUAAGACUGUGU........................ 2 0.259 ..............................................................GUUAACUGUAAGACUGUGUCUC..................... 1 0.00971 ...............................................................UUAACUGUAAGACUGUGUCU...................... 16 0.858 ...............................................................UUAACUGUAAGACUGUGUCUC..................... 1 0.00436 ................................................................UAACUGUAAGACUGUGUCU...................... 9 0.144 .................................................................AACUGUAAGACUGUGUCU...................... 20 0.84 ..................................................................ACUGUAAGACUGUGUCU...................... 5 0.0481 AAGGAUGCCGCUCAAUUACCCCGACAUAGUCAUACGGUGAAUGUUGUGUAUUGGAGACCAAUGUUAACUGUAAGACUGUGUCUCGGUGGUUGCCAGCCCAGCCAC ..((.((..(((((((((((..(((((((((.((((((.(((((((.((.......))))))))).)))))).)))))))))..))))))))..))).)).)).. (-40.80)

                       dme-miR-999-5p                        dme-miR-999-3p                                 Count     RPM (mean number of reads per million)
...GAUGCCGCUCAAUUACCCCG..................................................................................  2         0.223
....AUGCCGCUCAAUUACCCCG..................................................................................  4         0.187
.....UGCCGCUCAAUUACCCCG..................................................................................  3         0.166
.......................ACAUAGUCAUACGGUGAAUGUU............................................................  737       32.5
.......................ACAUAGUCAUACGGUGAAUGUUG...........................................................  30        1.47
.......................ACAUAGUCAUACGGUGAAUGU.............................................................  30        1.42
.......................ACAUAGUCAUACGGUGAAU...............................................................  5         0.0385
.......................ACAUAGUCAUACGGUGAA................................................................  3         0.116
.......................ACAUAGUCAUACGGUGAAUG..............................................................  2         0.104
.......................ACAUAGUCAUACGGUGAAUGUUGU..........................................................  1         0.0336
.......................ACAUAGUCAUACGGUGAAUGUUGUG.........................................................  1         0.042
.......................ACAUAGUCAUACGGUGAAUGUUGUGU........................................................  1         0.042
........................CAUAGUCAUACGGUGAAUGUU............................................................  8         0.336
........................CAUAGUCAUACGGUGAAUGUUG...........................................................  4         0.131
...........................AGUCAUACGGUGAAUGUU............................................................  1         0.019
................................................UAUUGGAGACCAAUGUUAACUGU..................................  1         0.0723
..................................................UUGGAGACCAAUGUUAACUGUAAGACU............................  2         0.0159
...........................................................AAUGUUAACUGUAAGACUGUGUCU......................  1         0.019
............................................................AUGUUAACUGUAAGACUGUGUCU......................  223       8.16
............................................................AUGUUAACUGUAAGACUGUGUC.......................  12        0.207
............................................................AUGUUAACUGUAAGACUGUGU........................  6         0.0697
.............................................................UGUUAACUGUAAGACUGUGUCU......................  28108     900
.............................................................UGUUAACUGUAAGACUGUGUC.......................  455       12.7
.............................................................UGUUAACUGUAAGACUGUGU........................  142       5.15
.............................................................UGUUAACUGUAAGACUGUGUCUC.....................  31        1.53
.............................................................UGUUAACUGUAAGACUGU..........................  23        0.475
.............................................................UGUUAACUGUAAGACUGUG.........................  19        0.267
.............................................................UGUUAACUGUAAGACUG...........................  1         0.0235
..............................................................GUUAACUGUAAGACUGUGUCU......................  532       12.5
..............................................................GUUAACUGUAAGACUGUGUC.......................  14        0.983
..............................................................GUUAACUGUAAGACUGUGU........................  2         0.259
..............................................................GUUAACUGUAAGACUGUGUCUC.....................  1         0.00971
...............................................................UUAACUGUAAGACUGUGUCU......................  16        0.858
...............................................................UUAACUGUAAGACUGUGUCUC.....................  1         0.00436
................................................................UAACUGUAAGACUGUGUCU......................  9         0.144
.................................................................AACUGUAAGACUGUGUCU......................  20        0.84
..................................................................ACUGUAAGACUGUGUCU......................  5         0.0481
AAGGAUGCCGCUCAAUUACCCCGACAUAGUCAUACGGUGAAUGUUGUGUAUUGGAGACCAAUGUUAACUGUAAGACUGUGUCUCGGUGGUUGCCAGCCCAGCCAC
..((.((..(((((((((((..(((((((((.((((((.(((((((.((.......))))))))).)))))).)))))))))..))))))))..))).)).)).. (-40.80)

miRBase

Deep sequencing reads for mature sequence MIMAT0005519

Filter reads

References

References
1	PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2	PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).