miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0005516
Stem-loop ID	dme-mir-252
Mature ID	dme-miR-252-5p
Reads	dme-miR-252-5p dme-miR-252-3p Count RPM (mean number of reads per million) ..............CCUAAGUACUAGUGCCGCAGGAG........................................................ 12 4.28 ..............CCUAAGUACUAGUGCCGCAGGA......................................................... 2 1.58 ...............CUAAGUACUAGUGCCGCAGGAG........................................................ 284874 1.13e+04 ...............CUAAGUACUAGUGCCGCAGGA......................................................... 33191 1.36e+03 ...............CUAAGUACUAGUGCCGCAGGAGU....................................................... 9307 458 ...............CUAAGUACUAGUGCCGCAGG.......................................................... 4422 140 ...............CUAAGUACUAGUGCCGCA............................................................ 1312 42.9 ...............CUAAGUACUAGUGCCGCAG........................................................... 840 25.8 ...............CUAAGUACUAGUGCCGCAGGAGUU...................................................... 543 20.7 ...............CUAAGUACUAGUGCCGCAGGAGUUA..................................................... 33 0.811 ...............CUAAGUACUAGUGCCGC............................................................. 1 0.751 ...............CUAAGUACUAGUGCCGCAGGAGUUAG.................................................... 1 0.052 ................UAAGUACUAGUGCCGCAGGAG........................................................ 2587 105 ................UAAGUACUAGUGCCGCAGGAGU....................................................... 1499 75.5 ................UAAGUACUAGUGCCGCAGGA......................................................... 193 8.35 ................UAAGUACUAGUGCCGCAGGAGUU...................................................... 119 8.58 ................UAAGUACUAGUGCCGCAGG.......................................................... 19 0.474 ................UAAGUACUAGUGCCGCAG........................................................... 6 0.248 ................UAAGUACUAGUGCCGCAGGAGUUA..................................................... 6 0.551 .................AAGUACUAGUGCCGCAGGAG........................................................ 42 1.19 .................AAGUACUAGUGCCGCAGGAGU....................................................... 12 0.387 .................AAGUACUAGUGCCGCAGGA......................................................... 6 1.02 ..................AGUACUAGUGCCGCAGGAG........................................................ 37 2.43 ..................AGUACUAGUGCCGCAGGAGU....................................................... 8 0.44 ..................AGUACUAGUGCCGCAGGA......................................................... 6 0.0991 ..................AGUACUAGUGCCGCAGGAGUU...................................................... 1 0.0499 ...................GUACUAGUGCCGCAGGAG........................................................ 30 2.49 ....................UACUAGUGCCGCAGGAGUU...................................................... 1 0.0071 .......................UAGUGCCGCAGGAGUUAG.................................................... 2 0.0142 ....................................GUUAGGUUCGUGUCCGCAAUACCUC................................ 2 0.0142 ....................................GUUAGGUUCGUGUCCGCA....................................... 1 0.0371 ....................................GUUAGGUUCGUGUCCGCAAUACC.................................. 1 0.042 .....................................UUAGGUUCGUGUCCGCAAUACCU................................. 35 0.714 .....................................UUAGGUUCGUGUCCGCAAUAC................................... 7 0.183 .....................................UUAGGUUCGUGUCCGCAAUACC.................................. 1 0.0207 .....................................UUAGGUUCGUGUCCGCAAUA.................................... 1 0.019 ......................................UAGGUUCGUGUCCGCAAUACC.................................. 7 1.59 ......................................UAGGUUCGUGUCCGCAAUACCU................................. 2 0.038 ..........................................UUCGUGUCCGCAAUACCU................................. 1 0.0326 ...................................................GCAAUACCUCCUGCUGCCCAAG.................... 1 0.0371 .......................................................UACCUCCUGCUGCCCAAGUGCU................ 2 0.0847 .........................................................CCUCCUGCUGCCCAAGUGCUU............... 1 0.0371 ..........................................................CUCCUGCUGCCCAAGUGCUUAUU............ 147 7.29 ..........................................................CUCCUGCUGCCCAAGUGCUUAUUA........... 30 1.59 ..........................................................CUCCUGCUGCCCAAGUGCUUAU............. 16 0.568 ..........................................................CUCCUGCUGCCCAAGUGCUUA.............. 1 0.0686 ...........................................................UCCUGCUGCCCAAGUGCUUAUU............ 2929 129 ...........................................................UCCUGCUGCCCAAGUGCUUAU............. 1027 29.7 ...........................................................UCCUGCUGCCCAAGUGCUUAUUA........... 1013 53.4 ...........................................................UCCUGCUGCCCAAGUGCUUA.............. 109 2.65 ...........................................................UCCUGCUGCCCAAGUGCUUAUUAA.......... 30 2.23 ...........................................................UCCUGCUGCCCAAGUGCUU............... 23 1.4 ...........................................................UCCUGCUGCCCAAGUGCU................ 5 0.269 ...........................................................UCCUGCUGCCCAAGUGCUUAUUAAA......... 2 0.0578 ............................................................CCUGCUGCCCAAGUGCUUAUUA........... 1349 91.5 ............................................................CCUGCUGCCCAAGUGCUUAUU............ 585 30.1 ............................................................CCUGCUGCCCAAGUGCUUAU............. 53 2.47 ............................................................CCUGCUGCCCAAGUGCUUAUUAA.......... 42 4.22 ............................................................CCUGCUGCCCAAGUGCUU............... 6 0.244 ............................................................CCUGCUGCCCAAGUGCUUA.............. 5 0.245 ............................................................CCUGCUGCCCAAGUGCUUAUUAAA......... 3 0.0834 .............................................................CUGCUGCCCAAGUGCUUAUUA........... 160 10.3 .............................................................CUGCUGCCCAAGUGCUUAUU............ 42 1.39 .............................................................CUGCUGCCCAAGUGCUUAUUAA.......... 9 0.52 .............................................................CUGCUGCCCAAGUGCUUAUUAAA......... 8 0.128 .............................................................CUGCUGCCCAAGUGCUUAU............. 4 0.0975 .............................................................CUGCUGCCCAAGUGCUUA.............. 2 0.037 ..............................................................UGCUGCCCAAGUGCUUAUUA........... 2 0.0397 ..............................................................UGCUGCCCAAGUGCUUAUUAA.......... 1 0.0371 ..............................................................UGCUGCCCAAGUGCUUAUU............ 1 0.042 ...............................................................GCUGCCCAAGUGCUUAUUA........... 3 2.32 ACCAAGUUCGCUUUCCUAAGUACUAGUGCCGCAGGAGUUAGGUUCGUGUCCGCAAUACCUCCUGCUGCCCAAGUGCUUAUUAAAGCGGCGAGU .....((.((((((..((((((((.(.((.(((((((....(((((....)).)))..))))))).)).).))))))))..)))))))).... (-34.60)

               dme-miR-252-5p                              dme-miR-252-3p                       Count     RPM (mean number of reads per million)
..............CCUAAGUACUAGUGCCGCAGGAG........................................................  12        4.28
..............CCUAAGUACUAGUGCCGCAGGA.........................................................  2         1.58
...............CUAAGUACUAGUGCCGCAGGAG........................................................  284874    1.13e+04
...............CUAAGUACUAGUGCCGCAGGA.........................................................  33191     1.36e+03
...............CUAAGUACUAGUGCCGCAGGAGU.......................................................  9307      458
...............CUAAGUACUAGUGCCGCAGG..........................................................  4422      140
...............CUAAGUACUAGUGCCGCA............................................................  1312      42.9
...............CUAAGUACUAGUGCCGCAG...........................................................  840       25.8
...............CUAAGUACUAGUGCCGCAGGAGUU......................................................  543       20.7
...............CUAAGUACUAGUGCCGCAGGAGUUA.....................................................  33        0.811
...............CUAAGUACUAGUGCCGC.............................................................  1         0.751
...............CUAAGUACUAGUGCCGCAGGAGUUAG....................................................  1         0.052
................UAAGUACUAGUGCCGCAGGAG........................................................  2587      105
................UAAGUACUAGUGCCGCAGGAGU.......................................................  1499      75.5
................UAAGUACUAGUGCCGCAGGA.........................................................  193       8.35
................UAAGUACUAGUGCCGCAGGAGUU......................................................  119       8.58
................UAAGUACUAGUGCCGCAGG..........................................................  19        0.474
................UAAGUACUAGUGCCGCAG...........................................................  6         0.248
................UAAGUACUAGUGCCGCAGGAGUUA.....................................................  6         0.551
.................AAGUACUAGUGCCGCAGGAG........................................................  42        1.19
.................AAGUACUAGUGCCGCAGGAGU.......................................................  12        0.387
.................AAGUACUAGUGCCGCAGGA.........................................................  6         1.02
..................AGUACUAGUGCCGCAGGAG........................................................  37        2.43
..................AGUACUAGUGCCGCAGGAGU.......................................................  8         0.44
..................AGUACUAGUGCCGCAGGA.........................................................  6         0.0991
..................AGUACUAGUGCCGCAGGAGUU......................................................  1         0.0499
...................GUACUAGUGCCGCAGGAG........................................................  30        2.49
....................UACUAGUGCCGCAGGAGUU......................................................  1         0.0071
.......................UAGUGCCGCAGGAGUUAG....................................................  2         0.0142
....................................GUUAGGUUCGUGUCCGCAAUACCUC................................  2         0.0142
....................................GUUAGGUUCGUGUCCGCA.......................................  1         0.0371
....................................GUUAGGUUCGUGUCCGCAAUACC..................................  1         0.042
.....................................UUAGGUUCGUGUCCGCAAUACCU.................................  35        0.714
.....................................UUAGGUUCGUGUCCGCAAUAC...................................  7         0.183
.....................................UUAGGUUCGUGUCCGCAAUACC..................................  1         0.0207
.....................................UUAGGUUCGUGUCCGCAAUA....................................  1         0.019
......................................UAGGUUCGUGUCCGCAAUACC..................................  7         1.59
......................................UAGGUUCGUGUCCGCAAUACCU.................................  2         0.038
..........................................UUCGUGUCCGCAAUACCU.................................  1         0.0326
...................................................GCAAUACCUCCUGCUGCCCAAG....................  1         0.0371
.......................................................UACCUCCUGCUGCCCAAGUGCU................  2         0.0847
.........................................................CCUCCUGCUGCCCAAGUGCUU...............  1         0.0371
..........................................................CUCCUGCUGCCCAAGUGCUUAUU............  147       7.29
..........................................................CUCCUGCUGCCCAAGUGCUUAUUA...........  30        1.59
..........................................................CUCCUGCUGCCCAAGUGCUUAU.............  16        0.568
..........................................................CUCCUGCUGCCCAAGUGCUUA..............  1         0.0686
...........................................................UCCUGCUGCCCAAGUGCUUAUU............  2929      129
...........................................................UCCUGCUGCCCAAGUGCUUAU.............  1027      29.7
...........................................................UCCUGCUGCCCAAGUGCUUAUUA...........  1013      53.4
...........................................................UCCUGCUGCCCAAGUGCUUA..............  109       2.65
...........................................................UCCUGCUGCCCAAGUGCUUAUUAA..........  30        2.23
...........................................................UCCUGCUGCCCAAGUGCUU...............  23        1.4
...........................................................UCCUGCUGCCCAAGUGCU................  5         0.269
...........................................................UCCUGCUGCCCAAGUGCUUAUUAAA.........  2         0.0578
............................................................CCUGCUGCCCAAGUGCUUAUUA...........  1349      91.5
............................................................CCUGCUGCCCAAGUGCUUAUU............  585       30.1
............................................................CCUGCUGCCCAAGUGCUUAU.............  53        2.47
............................................................CCUGCUGCCCAAGUGCUUAUUAA..........  42        4.22
............................................................CCUGCUGCCCAAGUGCUU...............  6         0.244
............................................................CCUGCUGCCCAAGUGCUUA..............  5         0.245
............................................................CCUGCUGCCCAAGUGCUUAUUAAA.........  3         0.0834
.............................................................CUGCUGCCCAAGUGCUUAUUA...........  160       10.3
.............................................................CUGCUGCCCAAGUGCUUAUU............  42        1.39
.............................................................CUGCUGCCCAAGUGCUUAUUAA..........  9         0.52
.............................................................CUGCUGCCCAAGUGCUUAUUAAA.........  8         0.128
.............................................................CUGCUGCCCAAGUGCUUAU.............  4         0.0975
.............................................................CUGCUGCCCAAGUGCUUA..............  2         0.037
..............................................................UGCUGCCCAAGUGCUUAUUA...........  2         0.0397
..............................................................UGCUGCCCAAGUGCUUAUUAA..........  1         0.0371
..............................................................UGCUGCCCAAGUGCUUAUU............  1         0.042
...............................................................GCUGCCCAAGUGCUUAUUA...........  3         2.32
ACCAAGUUCGCUUUCCUAAGUACUAGUGCCGCAGGAGUUAGGUUCGUGUCCGCAAUACCUCCUGCUGCCCAAGUGCUUAUUAAAGCGGCGAGU
.....((.((((((..((((((((.(.((.(((((((....(((((....)).)))..))))))).)).).))))))))..)))))))).... (-34.60)

miRBase

Deep sequencing reads for mature sequence MIMAT0005516

Filter reads

References

References
1	PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2	PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).