miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0005499
Stem-loop ID	dme-mir-983-1
Mature ID	dme-miR-983-5p
Reads	dme-miR-983-5p dme-miR-983-3p Count RPM (mean number of reads per million) ................AAUAAUACGUUUCGAACUAAUG..................................................... 3 0.328 .................AUAAUACGUUUCGAACUAAUGA.................................................... 878 74.9 .................AUAAUACGUUUCGAACUAAUG..................................................... 577 41.7 .................AUAAUACGUUUCGAACUAAU...................................................... 142 8.36 .................AUAAUACGUUUCGAACUAA....................................................... 11 0.352 .................AUAAUACGUUUCGAACUAAUGAU................................................... 5 0.455 .................AUAAUACGUUUCGAACU......................................................... 2 0.0181 .................AUAAUACGUUUCGAACUA........................................................ 2 0.209 ..................UAAUACGUUUCGAACUAAUGA.................................................... 13 1.23 ..................UAAUACGUUUCGAACUAAUGAU................................................... 11 0.578 ..................UAAUACGUUUCGAACUAAUG..................................................... 7 0.577 ..................UAAUACGUUUCGAACUAAU...................................................... 2 1.09 ...................AAUACGUUUCGAACUAAUGA.................................................... 3 0.132 ...................AAUACGUUUCGAACUAAUG..................................................... 1 0.114 .....................................................AUUAGGUAGUUACGCAUUAUCU................ 5543 389 .....................................................AUUAGGUAGUUACGCAUUAUC................. 688 45.4 .....................................................AUUAGGUAGUUACGCAUUAU.................. 394 25.4 .....................................................AUUAGGUAGUUACGCAUUAUCUA............... 120 21.1 .....................................................AUUAGGUAGUUACGCAUUA................... 18 1.21 .....................................................AUUAGGUAGUUACGCAUU.................... 3 0.222 ......................................................UUAGGUAGUUACGCAUUAUCU................ 291 28.7 ......................................................UUAGGUAGUUACGCAUUAUC................. 27 1.73 ......................................................UUAGGUAGUUACGCAUUAUCUA............... 23 6.25 ......................................................UUAGGUAGUUACGCAUUAU.................. 6 0.281 ......................................................UUAGGUAGUUACGCAUUA................... 1 0.137 .......................................................UAGGUAGUUACGCAUUAUCU................ 3 0.293 UAUAUUGCAAUAAUUAAAUAAUACGUUUCGAACUAAUGAUUUUCAGUUCAUUCAUUAGGUAGUUACGCAUUAUCUAGUUGUUGUAAACAUU ....((((((((((((.(((((.(((..(...(((((((............)))))))...)..))).))))).))))))))))))..... (-25.00)
Stem-loop ID	dme-mir-983-2
Mature ID	dme-miR-983-5p
Reads	dme-miR-983-5p dme-miR-983-3p Count RPM (mean number of reads per million) ...................AAUAAUACGUUUCGAACUAAUG.......................................................... 3 0.328 ....................AUAAUACGUUUCGAACUAAUGA......................................................... 878 74.9 ....................AUAAUACGUUUCGAACUAAUG.......................................................... 577 41.7 ....................AUAAUACGUUUCGAACUAAU........................................................... 142 8.36 ....................AUAAUACGUUUCGAACUAA............................................................ 11 0.352 ....................AUAAUACGUUUCGAACUAAUGAU........................................................ 5 0.455 ....................AUAAUACGUUUCGAACU.............................................................. 2 0.0181 ....................AUAAUACGUUUCGAACUA............................................................. 2 0.209 .....................UAAUACGUUUCGAACUAAUGA......................................................... 13 1.23 .....................UAAUACGUUUCGAACUAAUGAU........................................................ 11 0.578 .....................UAAUACGUUUCGAACUAAUG.......................................................... 7 0.577 .....................UAAUACGUUUCGAACUAAU........................................................... 2 1.09 ......................AAUACGUUUCGAACUAAUGA......................................................... 3 0.132 ......................AAUACGUUUCGAACUAAUG.......................................................... 1 0.114 ........................................................AUUAGGUAGUUACGCAUUAUCU..................... 5543 389 ........................................................AUUAGGUAGUUACGCAUUAUC...................... 688 45.4 ........................................................AUUAGGUAGUUACGCAUUAU....................... 394 25.4 ........................................................AUUAGGUAGUUACGCAUUAUCUA.................... 120 21.1 ........................................................AUUAGGUAGUUACGCAUUA........................ 18 1.21 ........................................................AUUAGGUAGUUACGCAUU......................... 3 0.222 .........................................................UUAGGUAGUUACGCAUUAUCU..................... 291 28.7 .........................................................UUAGGUAGUUACGCAUUAUC...................... 27 1.73 .........................................................UUAGGUAGUUACGCAUUAUCUA.................... 23 6.25 .........................................................UUAGGUAGUUACGCAUUAU....................... 6 0.281 .........................................................UUAGGUAGUUACGCAUUA........................ 1 0.137 ..........................................................UAGGUAGUUACGCAUUAUCU..................... 3 0.293 UAUUAUAUUGCAAUAAUUAAAUAAUACGUUUCGAACUAAUGAUUUUCAGUUCAUUCAUUAGGUAGUUACGCAUUAUCUAGUUGUUGUAAACAUUCAACU .......((((((((((((.(((((.(((..(...(((((((............)))))))...)..))).))))).)))))))))))).......... (-25.00)

dme-miR-983-5p dme-miR-983-3p Count RPM (mean number of reads per million) ................AAUAAUACGUUUCGAACUAAUG..................................................... 3 0.328 .................AUAAUACGUUUCGAACUAAUGA.................................................... 878 74.9 .................AUAAUACGUUUCGAACUAAUG..................................................... 577 41.7 .................AUAAUACGUUUCGAACUAAU...................................................... 142 8.36 .................AUAAUACGUUUCGAACUAA....................................................... 11 0.352 .................AUAAUACGUUUCGAACUAAUGAU................................................... 5 0.455 .................AUAAUACGUUUCGAACU......................................................... 2 0.0181 .................AUAAUACGUUUCGAACUA........................................................ 2 0.209 ..................UAAUACGUUUCGAACUAAUGA.................................................... 13 1.23 ..................UAAUACGUUUCGAACUAAUGAU................................................... 11 0.578 ..................UAAUACGUUUCGAACUAAUG..................................................... 7 0.577 ..................UAAUACGUUUCGAACUAAU...................................................... 2 1.09 ...................AAUACGUUUCGAACUAAUGA.................................................... 3 0.132 ...................AAUACGUUUCGAACUAAUG..................................................... 1 0.114 .....................................................AUUAGGUAGUUACGCAUUAUCU................ 5543 389 .....................................................AUUAGGUAGUUACGCAUUAUC................. 688 45.4 .....................................................AUUAGGUAGUUACGCAUUAU.................. 394 25.4 .....................................................AUUAGGUAGUUACGCAUUAUCUA............... 120 21.1 .....................................................AUUAGGUAGUUACGCAUUA................... 18 1.21 .....................................................AUUAGGUAGUUACGCAUU.................... 3 0.222 ......................................................UUAGGUAGUUACGCAUUAUCU................ 291 28.7 ......................................................UUAGGUAGUUACGCAUUAUC................. 27 1.73 ......................................................UUAGGUAGUUACGCAUUAUCUA............... 23 6.25 ......................................................UUAGGUAGUUACGCAUUAU.................. 6 0.281 ......................................................UUAGGUAGUUACGCAUUA................... 1 0.137 .......................................................UAGGUAGUUACGCAUUAUCU................ 3 0.293 UAUAUUGCAAUAAUUAAAUAAUACGUUUCGAACUAAUGAUUUUCAGUUCAUUCAUUAGGUAGUUACGCAUUAUCUAGUUGUUGUAAACAUU ....((((((((((((.(((((.(((..(...(((((((............)))))))...)..))).))))).))))))))))))..... (-25.00)

                    dme-miR-983-5p                      dme-miR-983-3p                                Count     RPM (mean number of reads per million)
...................AAUAAUACGUUUCGAACUAAUG..........................................................  3         0.328
....................AUAAUACGUUUCGAACUAAUGA.........................................................  878       74.9
....................AUAAUACGUUUCGAACUAAUG..........................................................  577       41.7
....................AUAAUACGUUUCGAACUAAU...........................................................  142       8.36
....................AUAAUACGUUUCGAACUAA............................................................  11        0.352
....................AUAAUACGUUUCGAACUAAUGAU........................................................  5         0.455
....................AUAAUACGUUUCGAACU..............................................................  2         0.0181
....................AUAAUACGUUUCGAACUA.............................................................  2         0.209
.....................UAAUACGUUUCGAACUAAUGA.........................................................  13        1.23
.....................UAAUACGUUUCGAACUAAUGAU........................................................  11        0.578
.....................UAAUACGUUUCGAACUAAUG..........................................................  7         0.577
.....................UAAUACGUUUCGAACUAAU...........................................................  2         1.09
......................AAUACGUUUCGAACUAAUGA.........................................................  3         0.132
......................AAUACGUUUCGAACUAAUG..........................................................  1         0.114
........................................................AUUAGGUAGUUACGCAUUAUCU.....................  5543      389
........................................................AUUAGGUAGUUACGCAUUAUC......................  688       45.4
........................................................AUUAGGUAGUUACGCAUUAU.......................  394       25.4
........................................................AUUAGGUAGUUACGCAUUAUCUA....................  120       21.1
........................................................AUUAGGUAGUUACGCAUUA........................  18        1.21
........................................................AUUAGGUAGUUACGCAUU.........................  3         0.222
.........................................................UUAGGUAGUUACGCAUUAUCU.....................  291       28.7
.........................................................UUAGGUAGUUACGCAUUAUC......................  27        1.73
.........................................................UUAGGUAGUUACGCAUUAUCUA....................  23        6.25
.........................................................UUAGGUAGUUACGCAUUAU.......................  6         0.281
.........................................................UUAGGUAGUUACGCAUUA........................  1         0.137
..........................................................UAGGUAGUUACGCAUUAUCU.....................  3         0.293
UAUUAUAUUGCAAUAAUUAAAUAAUACGUUUCGAACUAAUGAUUUUCAGUUCAUUCAUUAGGUAGUUACGCAUUAUCUAGUUGUUGUAAACAUUCAACU
.......((((((((((((.(((((.(((..(...(((((((............)))))))...)..))).))))).)))))))))))).......... (-25.00)

miRBase

Deep sequencing reads for mature sequence MIMAT0005499

Filter reads

References

References
1	PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2	PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).