miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0005481
Stem-loop ID	dme-mir-966
Mature ID	dme-miR-966-5p
Reads	dme-miR-966-5p dme-miR-966-3p Count RPM (mean number of reads per million) ...............UGUGGGUUGUGGGCUGUGUGG................................................... 149 7.23 ...............UGUGGGUUGUGGGCUGUGUGGCU................................................. 107 4.09 ...............UGUGGGUUGUGGGCUGUGUGGC.................................................. 38 2.05 ...............UGUGGGUUGUGGGCUGUGU..................................................... 28 1.39 ...............UGUGGGUUGUGGGCUGUGUG.................................................... 26 1.78 ...............UGUGGGUUGUGGGCUGUG...................................................... 7 0.405 ...............UGUGGGUUGUGGGCUGUGUGGCUG................................................ 1 0.0965 ................GUGGGUUGUGGGCUGUGUGG................................................... 5 0.0266 ................GUGGGUUGUGGGCUGUGUGGC.................................................. 4 0.0213 ................GUGGGUUGUGGGCUGUGUG.................................................... 1 0.00532 ................GUGGGUUGUGGGCUGUGU..................................................... 1 0.00532 ................GUGGGUUGUGGGCUGUGUGGCU................................................. 1 0.00532 ..................GGGUUGUGGGCUGUGUGGC.................................................. 1 0.0973 .................................................GCCGCCAGUUGAUAACCCCCAGC............... 1 0.0398 ..................................................CCGCCAGUUGAUAACCCCCAGC............... 47 3.86 ..................................................CCGCCAGUUGAUAACCCCCAG................ 29 1.99 ..................................................CCGCCAGUUGAUAACCCCCA................. 11 0.502 ..................................................CCGCCAGUUGAUAACCCCC.................. 2 0.0955 AACCUGAUCCGCUGCUGUGGGUUGUGGGCUGUGUGGCUGUGGUAUAGGUGCCGCCAGUUGAUAACCCCCAGCGUGGGCACGGACCCA ..((((.(((((.((((.(((((((.(((((.(((((............)))))))))).))))))).))))))))))).))..... (-43.50)

              dme-miR-966-5p                     dme-miR-966-3p                          Count     RPM (mean number of reads per million)
...............UGUGGGUUGUGGGCUGUGUGG...................................................  149       7.23
...............UGUGGGUUGUGGGCUGUGUGGCU.................................................  107       4.09
...............UGUGGGUUGUGGGCUGUGUGGC..................................................  38        2.05
...............UGUGGGUUGUGGGCUGUGU.....................................................  28        1.39
...............UGUGGGUUGUGGGCUGUGUG....................................................  26        1.78
...............UGUGGGUUGUGGGCUGUG......................................................  7         0.405
...............UGUGGGUUGUGGGCUGUGUGGCUG................................................  1         0.0965
................GUGGGUUGUGGGCUGUGUGG...................................................  5         0.0266
................GUGGGUUGUGGGCUGUGUGGC..................................................  4         0.0213
................GUGGGUUGUGGGCUGUGUG....................................................  1         0.00532
................GUGGGUUGUGGGCUGUGU.....................................................  1         0.00532
................GUGGGUUGUGGGCUGUGUGGCU.................................................  1         0.00532
..................GGGUUGUGGGCUGUGUGGC..................................................  1         0.0973
.................................................GCCGCCAGUUGAUAACCCCCAGC...............  1         0.0398
..................................................CCGCCAGUUGAUAACCCCCAGC...............  47        3.86
..................................................CCGCCAGUUGAUAACCCCCAG................  29        1.99
..................................................CCGCCAGUUGAUAACCCCCA.................  11        0.502
..................................................CCGCCAGUUGAUAACCCCC..................  2         0.0955
AACCUGAUCCGCUGCUGUGGGUUGUGGGCUGUGUGGCUGUGGUAUAGGUGCCGCCAGUUGAUAACCCCCAGCGUGGGCACGGACCCA
..((((.(((((.((((.(((((((.(((((.(((((............)))))))))).))))))).))))))))))).))..... (-43.50)

miRBase

Deep sequencing reads for mature sequence MIMAT0005481

Filter reads

References

References
1	PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2	PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).