miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0005468
Stem-loop ID	dme-mir-193
Mature ID	dme-miR-193-3p
Reads	dme-miR-193-5p dme-miR-193-3p Count RPM (mean number of reads per million) ................GGUUGGGAUUUUUUAGAUCAGCA..................................................................... 365 8.22 ................GGUUGGGAUUUUUUAGAUCAGCAG.................................................................... 83 2.3 ................GGUUGGGAUUUUUUAGAUCAGC...................................................................... 73 1.69 ................GGUUGGGAUUUUUUAGAUCAG....................................................................... 12 0.285 ................GGUUGGGAUUUUUUAGAUCA........................................................................ 3 0.0445 ................GGUUGGGAUUUUUUAGAU.......................................................................... 2 0.0488 ................GGUUGGGAUUUUUUAGAUCAGCAGU................................................................... 2 0.0675 .................GUUGGGAUUUUUUAGAUCAGC...................................................................... 39 0.891 .................GUUGGGAUUUUUUAGAUCAGCA..................................................................... 9 0.176 .................GUUGGGAUUUUUUAGAUCAG....................................................................... 7 0.0977 ..................UUGGGAUUUUUUAGAUCAGCAG.................................................................... 913 22.6 ..................UUGGGAUUUUUUAGAUCAGCA..................................................................... 788 23.2 ..................UUGGGAUUUUUUAGAUCAGC...................................................................... 127 4.07 ..................UUGGGAUUUUUUAGAUCAGCAGU................................................................... 38 0.659 ..................UUGGGAUUUUUUAGAUCAG....................................................................... 6 0.116 ..................UUGGGAUUUUUUAGAUCA........................................................................ 4 0.0704 ..................UUGGGAUUUUUUAGAUCAGCAGUU.................................................................. 2 0.0182 ...................UGGGAUUUUUUAGAUCAGCAGU................................................................... 204 5.76 ...................UGGGAUUUUUUAGAUCAGCAG.................................................................... 189 4.11 ...................UGGGAUUUUUUAGAUCAGCA..................................................................... 95 2.4 ...................UGGGAUUUUUUAGAUCAGC...................................................................... 17 0.381 ...................UGGGAUUUUUUAGAUCAGCAGUU.................................................................. 6 0.34 ...................UGGGAUUUUUUAGAUCAG....................................................................... 1 0.0091 ....................GGGAUUUUUUAGAUCAGCAGU................................................................... 1 0.0244 ......................GAUUUUUUAGAUCAGCAG.................................................................... 1 0.0244 ........................................UUAUUGCUAUAUAGCCAUAUUU.............................................. 20 0.789 ........................................UUAUUGCUAUAUAGCCAUAUUUAUAA.......................................... 2 0.0488 ........................................UUAUUGCUAUAUAGCCAUAUUUAUA........................................... 2 0.289 ........................................UUAUUGCUAUAUAGCCAUAUUUA............................................. 1 0.0244 .........................................UAUUGCUAUAUAGCCAUAUUU.............................................. 21 0.532 .........................................UAUUGCUAUAUAGCCAUAUUUAU............................................ 3 0.106 .........................................UAUUGCUAUAUAGCCAUAUUUAUA........................................... 2 0.0488 .........................................UAUUGCUAUAUAGCCAUAUUUAUAAAUC....................................... 1 0.0244 .........................................UAUUGCUAUAUAGCCAUAUU............................................... 1 0.0879 .........................................UAUUGCUAUAUAGCCAUAUUUAUAAAU........................................ 1 0.0431 ........................................................................UACUGGCCUACUAAGUCCCAAC.............. 7764 224 ........................................................................UACUGGCCUACUAAGUCCCAA............... 4817 160 ........................................................................UACUGGCCUACUAAGUCCCA................ 3813 106 ........................................................................UACUGGCCUACUAAGUCCC................. 303 8.99 ........................................................................UACUGGCCUACUAAGUCCCAACA............. 287 8.81 ........................................................................UACUGGCCUACUAAGUCC.................. 50 0.933 ........................................................................UACUGGCCUACUAAGUCCCAACAU............ 2 0.0335 .........................................................................ACUGGCCUACUAAGUCCCAACA............. 3760 107 .........................................................................ACUGGCCUACUAAGUCCCAAC.............. 1065 28.6 .........................................................................ACUGGCCUACUAAGUCCCAACAU............ 752 21.3 .........................................................................ACUGGCCUACUAAGUCCCAA............... 642 19.6 .........................................................................ACUGGCCUACUAAGUCCCA................ 252 8.9 .........................................................................ACUGGCCUACUAAGUCCC................. 31 0.469 .........................................................................ACUGGCCUACUAAGUCCCAACAUA........... 1 0.0431 ..........................................................................CUGGCCUACUAAGUCCCAAC.............. 70 1.31 ..........................................................................CUGGCCUACUAAGUCCCAACA............. 51 1.38 ..........................................................................CUGGCCUACUAAGUCCCAA............... 37 0.592 ..........................................................................CUGGCCUACUAAGUCCCA................ 17 0.553 ..........................................................................CUGGCCUACUAAGUCCCAACAU............ 10 0.208 ...........................................................................UGGCCUACUAAGUCCCAACAU............ 69 2.89 ...........................................................................UGGCCUACUAAGUCCCAACA............. 35 0.657 ...........................................................................UGGCCUACUAAGUCCCAACAUA........... 23 1.57 ...........................................................................UGGCCUACUAAGUCCCAAC.............. 14 0.225 ...........................................................................UGGCCUACUAAGUCCCAACAUAA.......... 4 0.115 ...........................................................................UGGCCUACUAAGUCCCAA............... 1 0.0879 UGUGUGCCCUUAUUAUGGUUGGGAUUUUUUAGAUCAGCAGUUAUUGCUAUAUAGCCAUAUUUAUAAAUCUUCUACUGGCCUACUAAGUCCCAACAUAAUGAGAGUAAA ....(((.(((((((((.(((((((((..(((..(((.((.(((.(((....))).)))............)).)))..)))..)))))))))))))))))).))).. (-33.12)

                  dme-miR-193-5p                                        dme-miR-193-3p                         Count     RPM (mean number of reads per million)
................GGUUGGGAUUUUUUAGAUCAGCA.....................................................................  365       8.22
................GGUUGGGAUUUUUUAGAUCAGCAG....................................................................  83        2.3
................GGUUGGGAUUUUUUAGAUCAGC......................................................................  73        1.69
................GGUUGGGAUUUUUUAGAUCAG.......................................................................  12        0.285
................GGUUGGGAUUUUUUAGAUCA........................................................................  3         0.0445
................GGUUGGGAUUUUUUAGAU..........................................................................  2         0.0488
................GGUUGGGAUUUUUUAGAUCAGCAGU...................................................................  2         0.0675
.................GUUGGGAUUUUUUAGAUCAGC......................................................................  39        0.891
.................GUUGGGAUUUUUUAGAUCAGCA.....................................................................  9         0.176
.................GUUGGGAUUUUUUAGAUCAG.......................................................................  7         0.0977
..................UUGGGAUUUUUUAGAUCAGCAG....................................................................  913       22.6
..................UUGGGAUUUUUUAGAUCAGCA.....................................................................  788       23.2
..................UUGGGAUUUUUUAGAUCAGC......................................................................  127       4.07
..................UUGGGAUUUUUUAGAUCAGCAGU...................................................................  38        0.659
..................UUGGGAUUUUUUAGAUCAG.......................................................................  6         0.116
..................UUGGGAUUUUUUAGAUCA........................................................................  4         0.0704
..................UUGGGAUUUUUUAGAUCAGCAGUU..................................................................  2         0.0182
...................UGGGAUUUUUUAGAUCAGCAGU...................................................................  204       5.76
...................UGGGAUUUUUUAGAUCAGCAG....................................................................  189       4.11
...................UGGGAUUUUUUAGAUCAGCA.....................................................................  95        2.4
...................UGGGAUUUUUUAGAUCAGC......................................................................  17        0.381
...................UGGGAUUUUUUAGAUCAGCAGUU..................................................................  6         0.34
...................UGGGAUUUUUUAGAUCAG.......................................................................  1         0.0091
....................GGGAUUUUUUAGAUCAGCAGU...................................................................  1         0.0244
......................GAUUUUUUAGAUCAGCAG....................................................................  1         0.0244
........................................UUAUUGCUAUAUAGCCAUAUUU..............................................  20        0.789
........................................UUAUUGCUAUAUAGCCAUAUUUAUAA..........................................  2         0.0488
........................................UUAUUGCUAUAUAGCCAUAUUUAUA...........................................  2         0.289
........................................UUAUUGCUAUAUAGCCAUAUUUA.............................................  1         0.0244
.........................................UAUUGCUAUAUAGCCAUAUUU..............................................  21        0.532
.........................................UAUUGCUAUAUAGCCAUAUUUAU............................................  3         0.106
.........................................UAUUGCUAUAUAGCCAUAUUUAUA...........................................  2         0.0488
.........................................UAUUGCUAUAUAGCCAUAUUUAUAAAUC.......................................  1         0.0244
.........................................UAUUGCUAUAUAGCCAUAUU...............................................  1         0.0879
.........................................UAUUGCUAUAUAGCCAUAUUUAUAAAU........................................  1         0.0431
........................................................................UACUGGCCUACUAAGUCCCAAC..............  7764      224
........................................................................UACUGGCCUACUAAGUCCCAA...............  4817      160
........................................................................UACUGGCCUACUAAGUCCCA................  3813      106
........................................................................UACUGGCCUACUAAGUCCC.................  303       8.99
........................................................................UACUGGCCUACUAAGUCCCAACA.............  287       8.81
........................................................................UACUGGCCUACUAAGUCC..................  50        0.933
........................................................................UACUGGCCUACUAAGUCCCAACAU............  2         0.0335
.........................................................................ACUGGCCUACUAAGUCCCAACA.............  3760      107
.........................................................................ACUGGCCUACUAAGUCCCAAC..............  1065      28.6
.........................................................................ACUGGCCUACUAAGUCCCAACAU............  752       21.3
.........................................................................ACUGGCCUACUAAGUCCCAA...............  642       19.6
.........................................................................ACUGGCCUACUAAGUCCCA................  252       8.9
.........................................................................ACUGGCCUACUAAGUCCC.................  31        0.469
.........................................................................ACUGGCCUACUAAGUCCCAACAUA...........  1         0.0431
..........................................................................CUGGCCUACUAAGUCCCAAC..............  70        1.31
..........................................................................CUGGCCUACUAAGUCCCAACA.............  51        1.38
..........................................................................CUGGCCUACUAAGUCCCAA...............  37        0.592
..........................................................................CUGGCCUACUAAGUCCCA................  17        0.553
..........................................................................CUGGCCUACUAAGUCCCAACAU............  10        0.208
...........................................................................UGGCCUACUAAGUCCCAACAU............  69        2.89
...........................................................................UGGCCUACUAAGUCCCAACA.............  35        0.657
...........................................................................UGGCCUACUAAGUCCCAACAUA...........  23        1.57
...........................................................................UGGCCUACUAAGUCCCAAC..............  14        0.225
...........................................................................UGGCCUACUAAGUCCCAACAUAA..........  4         0.115
...........................................................................UGGCCUACUAAGUCCCAA...............  1         0.0879
UGUGUGCCCUUAUUAUGGUUGGGAUUUUUUAGAUCAGCAGUUAUUGCUAUAUAGCCAUAUUUAUAAAUCUUCUACUGGCCUACUAAGUCCCAACAUAAUGAGAGUAAA
....(((.(((((((((.(((((((((..(((..(((.((.(((.(((....))).)))............)).)))..)))..)))))))))))))))))).))).. (-33.12)

miRBase

Deep sequencing reads for mature sequence MIMAT0005468

Filter reads

References

References
1	PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2	PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).