Deep sequencing reads for mature sequence MIMAT0005439

Stem-loop ID mmu-let-7c-2
Mature ID mmu-let-7c-2-3p
Reads 
              mmu-let-7c-5p                                 mmu-let-7c-2-3p                       Count     RPM (mean number of reads per million)
.........GGGGUGAGGUAGUAGGUUGUAUGGUU............................................................  1         0.00227
..........GGGUGAGGUAGUAGGUUGUAUGGUU............................................................  2         0.0188
..........GGGUGAGGUAGUAGGUUGUAU................................................................  1         0.00105
...........GGUGAGGUAGUAGGUUGUAUGGU.............................................................  3         0.00662
...........GGUGAGGUAGUAGGUUGUAU................................................................  2         0.0289
...........GGUGAGGUAGUAGGUUGUAUGGUU............................................................  1         0.00271
...........GGUGAGGUAGUAGGUUGUAUGG..............................................................  1         0.00369
............GUGAGGUAGUAGGUUGUAU................................................................  35        0.098
............GUGAGGUAGUAGGUUGUAUGGUU............................................................  22        0.0553
............GUGAGGUAGUAGGUUGUAUGGU.............................................................  4         0.00952
............GUGAGGUAGUAGGUUGUAUG...............................................................  3         0.00688
............GUGAGGUAGUAGGUUGUAUGGUUU...........................................................  3         0.00984
............GUGAGGUAGUAGGUUGUAUGG..............................................................  3         0.00672
.............UGAGGUAGUAGGUUGUAUGGUU............................................................  9340953   3.33e+04
.............UGAGGUAGUAGGUUGUAUGGUUU...........................................................  2621122   7.72e+03
.............UGAGGUAGUAGGUUGUAUGGU.............................................................  1562314   5.32e+03
.............UGAGGUAGUAGGUUGUAUG...............................................................  851538    2.24e+03
.............UGAGGUAGUAGGUUGUAUGGUUUU..........................................................  527663    1.52e+03
.............UGAGGUAGUAGGUUGUAUGG..............................................................  420020    1.38e+03
.............UGAGGUAGUAGGUUGUAUGGUUUUGG........................................................  143128    464
.............UGAGGUAGUAGGUUGUAUGGUUUUG.........................................................  119151    375
.............UGAGGUAGUAGGUUGUAU................................................................  4026      75.3
.............UGAGGUAGUAGGUUGUA.................................................................  1268      27.1
.............UGAGGUAGUAGGUUGUAUGGUUUUGGG.......................................................  1107      3.52
..............GAGGUAGUAGGUUGUAUGGUU............................................................  39478     161
..............GAGGUAGUAGGUUGUAUGGUUU...........................................................  6980      20.6
..............GAGGUAGUAGGUUGUAUGGU.............................................................  4285      15.8
..............GAGGUAGUAGGUUGUAUGG..............................................................  1444      5.12
..............GAGGUAGUAGGUUGUAUGGUUUU..........................................................  986       2.64
..............GAGGUAGUAGGUUGUAUGGUUUUG.........................................................  157       0.533
..............GAGGUAGUAGGUUGUAU................................................................  51        0.647
..............GAGGUAGUAGGUUGUAUG...............................................................  20        0.199
..............GAGGUAGUAGGUUGUAUGGUUUUGG........................................................  11        0.0344
...............AGGUAGUAGGUUGUAUGGUU............................................................  833       7.92
...............AGGUAGUAGGUUGUAUGGUUU...........................................................  207       0.66
...............AGGUAGUAGGUUGUAUGGU.............................................................  114       0.963
...............AGGUAGUAGGUUGUAUGGUUUU..........................................................  32        0.075
...............AGGUAGUAGGUUGUAUGG..............................................................  19        0.0803
...............AGGUAGUAGGUUGUAUGGUUUUG.........................................................  11        0.0361
................GGUAGUAGGUUGUAUGGUU............................................................  1263      23.3
................GGUAGUAGGUUGUAUGGUUU...........................................................  295       1.95
................GGUAGUAGGUUGUAUGGU.............................................................  172       1.78
................GGUAGUAGGUUGUAUGGUUUU..........................................................  46        0.759
................GGUAGUAGGUUGUAUGG..............................................................  35        1.41
................GGUAGUAGGUUGUAUGGUUUUG.........................................................  22        0.063
................GGUAGUAGGUUGUAUGGUUUUGGG.......................................................  1         0.00383
.................GUAGUAGGUUGUAUGGUU............................................................  211       4
.................GUAGUAGGUUGUAUGGUUU...........................................................  69        0.228
.................GUAGUAGGUUGUAUGGU.............................................................  19        0.167
.................GUAGUAGGUUGUAUGGUUUU..........................................................  13        0.0358
..................UAGUAGGUUGUAUGGUU............................................................  673       11.1
..................UAGUAGGUUGUAUGGUUU...........................................................  79        0.572
..................UAGUAGGUUGUAUGGUUUU..........................................................  18        0.0723
..................UAGUAGGUUGUAUGGUUUUG.........................................................  2         0.00433
...................AGUAGGUUGUAUGGUUU...........................................................  32        0.21
...................AGUAGGUUGUAUGGUUUUG.........................................................  2         0.00428
....................GUAGGUUGUAUGGUUUU..........................................................  2         0.013
...................................UUGGGCUCUGCCCCGCUCUGCGGUAA..................................  11        0.187
...................................UUGGGCUCUGCCCCGCUCUGCGGU....................................  5         0.0894
...................................UUGGGCUCUGCCCCGCUCUGCGGUA...................................  5         0.0272
...................................UUGGGCUCUGCCCCGCUCU.........................................  1         0.00394
...................................UUGGGCUCUGCCCCGCUCUGCGG.....................................  1         0.00105
.....................................GGGCUCUGCCCCGCUCUGCGGU....................................  3         0.0326
..................................................CUCUGCGGUAACUAUACAA..........................  2         0.00455
..........................................................UAACUAUACAAUCUACUGUCUUUC.............  1         0.0334
...........................................................AACUAUACAAUCUACUGUCUUUC.............  2         0.0154
.............................................................CUAUACAAUCUACUGUCUUUC.............  1228      18.1
.............................................................CUAUACAAUCUACUGUCUUUCC............  441       8.48
.............................................................CUAUACAAUCUACUGUCUUU..............  204       2
.............................................................CUAUACAAUCUACUGUCUU...............  25        0.349
.............................................................CUAUACAAUCUACUGUCUUUCCU...........  21        0.151
.............................................................CUAUACAAUCUACUGUC.................  7         0.0773
.............................................................CUAUACAAUCUACUGUCU................  4         0.0319
.............................................................CUAUACAAUCUACUGUCUUUCCUGAA........  1         0.00341
..............................................................UAUACAAUCUACUGUCUUUC.............  23        0.169
..............................................................UAUACAAUCUACUGUCUUU..............  7         0.0808
..............................................................UAUACAAUCUACUGUCUUUCC............  6         0.111
...............................................................AUACAAUCUACUGUCUUUC.............  5         0.0437
...............................................................AUACAAUCUACUGUCUUUCC............  3         0.0339
.................................................................ACAAUCUACUGUCUUUC.............  3         0.0305
.................................................................ACAAUCUACUGUCUUUCC............  3         0.0326
..................................................................CAAUCUACUGUCUUUCC............  1         0.0334
ACGGCCUUUGGGGUGAGGUAGUAGGUUGUAUGGUUUUGGGCUCUGCCCCGCUCUGCGGUAACUAUACAAUCUACUGUCUUUCCUGAAGUGGCCGC
.((((((((.(((.(((..((((((((((((((((..((((...))))(((...)))..))))))))))))))))..))).))).))).))))). (-48.70)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 67ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 3780ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 4158ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 426ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 1409testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 5165testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 6900testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 971testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 27807brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 90233brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 151015brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 20438brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 497858brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 2547whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 17414whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 22196whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 4296whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 68319whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 95635whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 110077whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 103467whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 105869whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 106243whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 96998whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 310981whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 4513embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 20792embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 28674embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 3855embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 47126embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 114115embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 154632embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 13730embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 32608embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 63252embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 93427embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 2466579bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 2102221bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 2398157spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 1919789spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 1841097spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 2204640spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 1154251spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 1018053spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 1635033spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 2552281peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 1767999spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 1465550lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 557421lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 2003738bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 2720338bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 2136019bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 1054792peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 212810peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 1700072bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 1634790bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 1410846spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 1833317thymus GEO : GSM539856
ER0000000238 2496224spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 2648871spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 2584785spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 1381428lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 1785274lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 2163097lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 4407175spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 2425893lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 1697190lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 63045 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 1886811 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 572059heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 3447041brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 4280621lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 997026liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 3525578kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 1999859pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 2275064skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 604907skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 3199364salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 92040testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 2830935ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 1042525spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 1388176lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).