Deep sequencing reads for mature sequence MIMAT0005194

Stem-loop ID

ppt-MIR1067

Mature ID

ppt-miR1067

Reads

                               ppt-miR1067                                                                                                                               Count     RPM (mean number of reads per million)
.............................ACAUACUGAAGUUUGAUGCCA......................................................................................................................  14        115
.............................ACAUACUGAAGUUUGAUG.........................................................................................................................  1         16
..............................CAUACUGAAGUUUGAUGCCAU.....................................................................................................................  1         3.98
..............................CAUACUGAAGUUUGAUGCCA......................................................................................................................  1         3.98
......................................AGUUUGAUGCCAUGUUCUGAUGAA..........................................................................................................  1         3.23
.........................................................................................................................GCAUCAAACGUCAGCAUGUGU..........................  5         19.2
.............................................................................................................................CAAACGUCAGCAUGUGU..........................  1         16
AGACUUGUUGUUUGCGGUUAAUUAAUUGCACAUACUGAAGUUUGAUGCCAUGUUCUGAUGAAUCCGGUCUUGAUUCCUGAAGGAAAGAAACAUGAAAUUGCCGCUGUGGCAUCUCUACAUGGCAUCAAACGUCAGCAUGUGUAAAUAGUUAAUUGCACGACACCAGAA
....(((.((((((((((((((((.((((((((.((((.((((((((((((((...((((....((((.....((((....)))).....((......))..))))...))))...)))))))))))))).)))).)))))))).)))))))))))).)))).))).. (-66.10)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000213	7	whole body	GEO : GSM115095	7 day wild-type protonemata	[ Axtell MJ et al.]
ER0000000214	14	gametophore	GEO : GSM115096	14 day old wild-type P. patens -- Protonemata and young Gametophores	[ Axtell MJ et al.]
ER0000000215	3	gametophore	GEO : GSM115097	~60 day old wild-type mature gametophores and sporophytes	[ Axtell MJ et al.]

References

1. PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).