Deep sequencing reads for mature sequence MIMAT0005020

Stem-loop ID dme-mir-1007
Mature ID dme-miR-1007-3p
Reads 
   dme-miR-1007-5p                      dme-miR-1007-3p            Count     RPM (mean number of reads per million)
GUAAGCAGUGUUUGAACUCGAUC..........................................  13        0.385
GUAAGCAGUGUUUGAACUCGAUCUUG.......................................  1         0.0657
GUAAGCAGUGUUUGAACUCGA............................................  1         0.0309
GUAAGCAGUGUUUGAACUCGAU...........................................  1         0.159
GUAAGCAGUGUUUGAACUCGAUCUUGGU.....................................  1         0.00876
.UAAGCAGUGUUUGAACUCGAUC..........................................  1         0.0128
....GCAGUGUUUGAACUCGAUCUUGG......................................  1         0.0657
....GCAGUGUUUGAACUCGAUCUU........................................  1         0.109
.......GUGUUUGAACUCGAUCUUGGU.....................................  1         0.244
...................GAUCUUGGUUCUUGGACUCUUG........................  1         0.245
......................CUUGGUUCUUGGACUCUUGA.......................  1         0.0272
..........................................UAAGCUCAAUUAACUGUUUGCA.  246       10.1
..........................................UAAGCUCAAUUAACUGUUUGCAG  176       7.86
..........................................UAAGCUCAAUUAACUGUUUGC..  55        1.82
..........................................UAAGCUCAAUUAACUGUUUG...  14        0.283
..........................................UAAGCUCAAUUAACUGUU.....  2         0.227
..........................................UAAGCUCAAUUAACUGUUU....  1         0.00876
...........................................AAGCUCAAUUAACUGUUUGC..  1         0.0552
..............................................CUCAAUUAACUGUUUGCA.  2         0.0209
GUAAGCAGUGUUUGAACUCGAUCUUGGUUCUUGGACUCUUGAUAAGCUCAAUUAACUGUUUGCAG
(((((((((..((((.((..(((..((((....))).)..))).)).))))...))))))))).. (-20.00)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000010 20head GEO : GSM240749 [ Chung WJ et al.]
ER0000000011 2S2 cell GEO : GSM272651 [ Chung WJ et al.]
ER0000000012 16S2 cell GEO : GSM272652 [ Chung WJ et al.]
ER0000000013 6Kc cell GEO : GSM272653 [ Chung WJ et al.]
ER0000000014 2imaginal disc GEO : GSM275691 [ Chung WJ et al.]
ER0000000015 7head GEO : GSM286601 [ Chung WJ et al.]
ER0000000016 2whole body GEO : GSM286602 [ Chung WJ et al.]
ER0000000017 2whole body GEO : GSM286603 [ Chung WJ et al.]
ER0000000018 9embryo GEO : GSM286604 [ Chung WJ et al.]
ER0000000019 2embryo GEO : GSM286605 [ Chung WJ et al.]
ER0000000021 4embryo GEO : GSM286607 [ Chung WJ et al.]
ER0000000022 4embryo GEO : GSM286611 [ Chung WJ et al.]
ER0000000079 6whole body GEO : GSM322208 3rd instar larvae
ER0000000080 13whole body GEO : GSM322219 2-4 day old pupae
ER0000000081 1whole body GEO : GSM322245 3rd instar larvae
ER0000000083 24head GEO : GSM322533 adult female head
ER0000000084 109head GEO : GSM322543 adult male head
ER0000000086 2whole body GEO : GSM360257 1st instar larvae
ER0000000087 7whole body GEO : GSM360260 0-1 day old pupae
ER0000000088 6whole body GEO : GSM360262 0-2 day old pupae
ER0000000089 1embryo GEO : GSM364902 12-24hr embryo
ER0000000091 2whole body GEO : GSM280083 from 2-4 day old flies
ER0000000092 1whole body GEO : GSM280084 from 2-4 day old flies
ER0000000093 6whole body GEO : GSM280085 from 2-4 day old flies
ER0000000096 6S2 cell GEO : GSM280088
ER0000000099 5imaginal disc GEO : GSM399105 imaginal disc/brain
ER0000000100 9whole body GEO : GSM399106 female body
ER0000000101 24whole body GEO : GSM399107 male body
ER0000000102 20S2 cell GEO : GSM371638
ER0000000115 7head GEO : GSM180328 adult heads (female heads, male heads) [ Ruby JG et al.]
ER0000000116 1whole body GEO : GSM180329 adult bodies (female bodies, male bodies) [ Ruby JG et al.]
ER0000000119 1embryo GEO : GSM180332 mid embryo (6-10) [ Ruby JG et al.]
ER0000000122 2imaginal disc GEO : GSM180335 [ Ruby JG et al.]
ER0000000124 2S2 cell GEO : GSM180337 tissue culture cells (S2 only) [ Ruby JG et al.]
ER0000000127 44ovary GEO : GSM385744 Ovary Somatic Sheet (OSS) cells
ER0000000128 74ovary GEO : GSM385748 Ovary Somatic Sheet (OSS) cells
ER0000000129 102ovary GEO : GSM385821 Ovary Somatic Sheet (OSS) cells
ER0000000130 30ovary GEO : GSM385822 Ovary Somatic Sheet (OSS) cells
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2
PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).