Deep sequencing reads for mature sequence MIMAT0004982

Stem-loop ID

hsa-mir-939

Mature ID

hsa-miR-939-5p

Reads

               hsa-miR-939-5p                   hsa-miR-939-3p                      Count     RPM (mean number of reads per million)
.................................................CCCUGGGCCUCUGCUCCCCAGU...........  2         0.11
UGUGGGCAGGGCCCUGGGGAGCUGAGGCUCUGGGGGUGGCCGGGGCUGACCCUGGGCCUCUGCUCCCCAGUGUCUGACCGCG
.((((...((((.(((((((((.(((((.(..(((..(((....)))..)))..)))))).))))))))).))))..)))). (-59.20)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000108	2	melanoma	GEO : GSM458540	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000140	1	squamous cell	GEO : GSM532876		[ Witten D et al.]
ER0000000150	1	squamous cell	GEO : GSM532886		[ Witten D et al.]
ER0000000157	5		GEO : GSM532893	normal cervix	[ Witten D et al.]
ER0000000164	2	squamous cell	GEO : GSM532900		[ Witten D et al.]
ER0000000168	1	adenosquamous cell	GEO : GSM532904		[ Witten D et al.]
ER0000000171	1		GEO : GSM532907	normal cervix	[ Witten D et al.]
ER0000000174	4	squamous cell	GEO : GSM532910		[ Witten D et al.]
ER0000000180	1	squamous cell	GEO : GSM532916		[ Witten D et al.]
ER0000000183	1	whole body	GEO : GSM532919	normal cervix	[ Witten D et al.]

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).