miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0004778
Stem-loop ID	hsa-mir-508
Mature ID	hsa-miR-508-5p
Reads	hsa-miR-508-5p hsa-miR-508-3p Count RPM (mean number of reads per million) .........................UACUCCAGAGGGCGUCACUCAU.................................................................... 1644 53.4 .........................UACUCCAGAGGGCGUCACUCAUG................................................................... 840 29.9 .........................UACUCCAGAGGGCGUCACUCAUGU.................................................................. 325 10.5 .........................UACUCCAGAGGGCGUCACUCA..................................................................... 203 8.14 .........................UACUCCAGAGGGCGUCACUC...................................................................... 31 1.19 .........................UACUCCAGAGGGCGUCACU....................................................................... 22 1.32 .........................UACUCCAGAGGGCGUCAC........................................................................ 12 0.372 .........................UACUCCAGAGGGCGUCACUCAUGUAA................................................................ 3 0.0571 .........................UACUCCAGAGGGCGUCACUCAUGUA................................................................. 3 0.0571 ............................................................UGAUUGUAGCCUUUUGGAGUAGA................................ 12956 553 ............................................................UGAUUGUAGCCUUUUGGAGUAG................................. 522 22.8 ............................................................UGAUUGUAGCCUUUUGGAG.................................... 29 1.29 ............................................................UGAUUGUAGCCUUUUGGAGUAGAG............................... 12 0.416 ............................................................UGAUUGUAGCCUUUUGGAGUA.................................. 4 0.187 ............................................................UGAUUGUAGCCUUUUGGAGU................................... 2 0.0381 .............................................................GAUUGUAGCCUUUUGGAGUAGA................................ 66 2.69 ..............................................................AUUGUAGCCUUUUGGAGUAGA................................ 260 11.8 ..............................................................AUUGUAGCCUUUUGGAGUAG................................. 7 0.306 CCACCUUCAGCUGAGUGUAGUGCCCUACUCCAGAGGGCGUCACUCAUGUAAACUAAAACAUGAUUGUAGCCUUUUGGAGUAGAGUAAUACACAUCACGUAACGCAUAUUUGGUGG (((((....((((((((((.(((.((((((((((((((..((.((((((........)))))).))..)))))))))))))).))).))))).)))......))......))))) (-49.80)

                         hsa-miR-508-5p                     hsa-miR-508-3p                                           Count     RPM (mean number of reads per million)
.........................UACUCCAGAGGGCGUCACUCAU....................................................................  1644      53.4
.........................UACUCCAGAGGGCGUCACUCAUG...................................................................  840       29.9
.........................UACUCCAGAGGGCGUCACUCAUGU..................................................................  325       10.5
.........................UACUCCAGAGGGCGUCACUCA.....................................................................  203       8.14
.........................UACUCCAGAGGGCGUCACUC......................................................................  31        1.19
.........................UACUCCAGAGGGCGUCACU.......................................................................  22        1.32
.........................UACUCCAGAGGGCGUCAC........................................................................  12        0.372
.........................UACUCCAGAGGGCGUCACUCAUGUAA................................................................  3         0.0571
.........................UACUCCAGAGGGCGUCACUCAUGUA.................................................................  3         0.0571
............................................................UGAUUGUAGCCUUUUGGAGUAGA................................  12956     553
............................................................UGAUUGUAGCCUUUUGGAGUAG.................................  522       22.8
............................................................UGAUUGUAGCCUUUUGGAG....................................  29        1.29
............................................................UGAUUGUAGCCUUUUGGAGUAGAG...............................  12        0.416
............................................................UGAUUGUAGCCUUUUGGAGUA..................................  4         0.187
............................................................UGAUUGUAGCCUUUUGGAGU...................................  2         0.0381
.............................................................GAUUGUAGCCUUUUGGAGUAGA................................  66        2.69
..............................................................AUUGUAGCCUUUUGGAGUAGA................................  260       11.8
..............................................................AUUGUAGCCUUUUGGAGUAG.................................  7         0.306
CCACCUUCAGCUGAGUGUAGUGCCCUACUCCAGAGGGCGUCACUCAUGUAAACUAAAACAUGAUUGUAGCCUUUUGGAGUAGAGUAAUACACAUCACGUAACGCAUAUUUGGUGG
(((((....((((((((((.(((.((((((((((((((..((.((((((........)))))).))..)))))))))))))).))).))))).)))......))......))))) (-49.80)

miRBase

Deep sequencing reads for mature sequence MIMAT0004778

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References

References
1	PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2	PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).