Deep sequencing reads for mature sequence MIMAT0004669

Stem-loop ID mmu-mir-125b-1
Mature ID mmu-miR-125b-1-3p
Reads 
             mmu-miR-125b-5p                       mmu-miR-125b-1-3p            Count     RPM (mean number of reads per million)
............AGUCCCUGAGACCCUAACUUGUG..........................................  1         0.0026
............AGUCCCUGAGACCCUAACUUGUGA.........................................  1         0.0023
.............GUCCCUGAGACCCUAACUUGUGA.........................................  177       1.53
.............GUCCCUGAGACCCUAACUUGUG..........................................  35        0.249
.............GUCCCUGAGACCCUAACUUGU...........................................  19        0.14
.............GUCCCUGAGACCCUAAC...............................................  1         0.0026
.............GUCCCUGAGACCCUAACUUGUGAU........................................  1         0.0026
..............UCCCUGAGACCCUAACUUGUGA.........................................  400052    4.84e+03
..............UCCCUGAGACCCUAACUUGUG..........................................  62357     669
..............UCCCUGAGACCCUAACUUGU...........................................  24523     215
..............UCCCUGAGACCCUAACUUGUGAU........................................  4396      38.4
..............UCCCUGAGACCCUAACUUG............................................  1908      13.1
..............UCCCUGAGACCCUAACUU.............................................  213       2.18
..............UCCCUGAGACCCUAACU..............................................  171       2.9
..............UCCCUGAGACCCUAACUUGUGAUG.......................................  32        0.146
..............UCCCUGAGACCCUAACUUGUGAUGU......................................  7         0.015
...............CCCUGAGACCCUAACUUGUGA.........................................  9493      127
...............CCCUGAGACCCUAACUUGUG..........................................  535       5.08
...............CCCUGAGACCCUAACUUGUGAU........................................  244       2.43
...............CCCUGAGACCCUAACUUGU...........................................  184       1.58
...............CCCUGAGACCCUAACUUG............................................  13        0.265
...............CCCUGAGACCCUAACUU.............................................  4         0.0281
................CCUGAGACCCUAACUUGUGA.........................................  4955      52.7
................CCUGAGACCCUAACUUGUG..........................................  513       5.19
................CCUGAGACCCUAACUUGU...........................................  200       1.86
................CCUGAGACCCUAACUUGUGAU........................................  56        0.732
................CCUGAGACCCUAACUUG............................................  12        0.0611
................CCUGAGACCCUAACUUGUGAUGUUU....................................  1         0.00106
.................CUGAGACCCUAACUUGUGA.........................................  455       5.5
.................CUGAGACCCUAACUUGUG..........................................  81        0.971
.................CUGAGACCCUAACUUGUGAU........................................  47        0.301
.................CUGAGACCCUAACUUGU...........................................  13        0.186
..................UGAGACCCUAACUUGUGA.........................................  387       5.74
..................UGAGACCCUAACUUGUG..........................................  72        0.852
..................UGAGACCCUAACUUGUGAU........................................  10        0.125
...................GAGACCCUAACUUGUGA.........................................  222       2.72
...................GAGACCCUAACUUGUGAU........................................  3         0.0508
.................................................AAUCCACGGGUUAGGCUCUUGGGA....  2         0.0758
.................................................AAUCCACGGGUUAGGCUCUUGGGAG...  1         0.00398
.................................................AAUCCACGGGUUAGGCUCUUGGG.....  1         0.0125
.................................................AAUCCACGGGUUAGGCUCUUGG......  1         0.0459
..................................................AUCCACGGGUUAGGCUCUUGGGAGC..  1         0.0102
...................................................UCCACGGGUUAGGCUCUUGGGAG...  173       1.31
...................................................UCCACGGGUUAGGCUCUUGGGA....  116       2.3
...................................................UCCACGGGUUAGGCUCUUGGG.....  22        0.424
...................................................UCCACGGGUUAGGCUCUUGG......  19        0.131
...................................................UCCACGGGUUAGGCUCUUG.......  5         0.00921
...................................................UCCACGGGUUAGGCUCUUGGGAGC..  1         0.00398
....................................................CCACGGGUUAGGCUCUUGGGAG...  2         0.00212
....................................................CCACGGGUUAGGCUCUUGGGAGC..  1         0.0102
.....................................................CACGGGUUAGGCUCUUGGGAG...  501       2.72
.....................................................CACGGGUUAGGCUCUUGGGAGC..  129       1.45
.....................................................CACGGGUUAGGCUCUUGGGA....  72        0.568
.....................................................CACGGGUUAGGCUCUUGGG.....  23        0.135
.....................................................CACGGGUUAGGCUCUUGG......  10        0.05
.....................................................CACGGGUUAGGCUCUUGGGAGCU.  5         0.0262
......................................................ACGGGUUAGGCUCUUGGGAG...  2613      11
......................................................ACGGGUUAGGCUCUUGGGAGCU.  1639      23.6
......................................................ACGGGUUAGGCUCUUGGGAGC..  742       7.52
......................................................ACGGGUUAGGCUCUUGGGA....  237       1.72
......................................................ACGGGUUAGGCUCUUGGG.....  17        0.137
......................................................ACGGGUUAGGCUCUUGGGAGCUG  5         0.0274
......................................................ACGGGUUAGGCUCUUGG......  1         0.0023
.......................................................CGGGUUAGGCUCUUGGGAGCU.  15        0.268
.......................................................CGGGUUAGGCUCUUGGGAGC..  4         0.0431
.......................................................CGGGUUAGGCUCUUGGGA....  2         0.0234
........................................................GGGUUAGGCUCUUGGGAGCU.  41        0.501
........................................................GGGUUAGGCUCUUGGGAGC..  9         0.0908
........................................................GGGUUAGGCUCUUGGGAG...  2         0.0052
........................................................GGGUUAGGCUCUUGGGA....  1         0.0023
.........................................................GGUUAGGCUCUUGGGAGCU.  113       1.33
.........................................................GGUUAGGCUCUUGGGAGC..  31        0.54
.........................................................GGUUAGGCUCUUGGGAG...  18        0.396
..........................................................GUUAGGCUCUUGGGAGCU.  58        0.629
..........................................................GUUAGGCUCUUGGGAGC..  14        0.133
...........................................................UUAGGCUCUUGGGAGCU.  241       4.53
UGCGCUCCCCUCAGUCCCUGAGACCCUAACUUGUGAUGUUUACCGUUUAAAUCCACGGGUUAGGCUCUUGGGAGCUG
...........(((..((..(((.(((((((((((..(((((.....))))).))))))))))).)))..))..))) (-30.70)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 21ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 2760ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 1940ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 175ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 282testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 1204testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 1051testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 165testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 7636brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 32256brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 36617brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 4780brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 153101brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 377whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 3721whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 3327whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 497whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 9417whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 13029whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 15262whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 14673whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 15477whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 14851whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 14359whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 53320whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 5849embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 32387embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 32108embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 4297embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 354embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 1201embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 1175embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 108embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 1252embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 3751embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 3953embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 176bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 29bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 31spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 1spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 2spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 1spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 4spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 4spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 81spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 51peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 1spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 2lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 1lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 154bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 52bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 252bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 47peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 11peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 148bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 7635bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 5spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 15thymus GEO : GSM539856
ER0000000238 3spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 14spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 1spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 2lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000243 25lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 32998spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 49lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 7lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 172 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 7067 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 778heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 11420brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 1996lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 194liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 2451kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 895pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 7351skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 762skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 3938salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 344testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 3382ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 1spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 2lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).