Deep sequencing reads for mature sequence MIMAT0004631

Stem-loop ID mmu-mir-29a
Mature ID mmu-miR-29a-5p
Reads 
               mmu-miR-29a-5p                        mmu-miR-29a-3p                        Count     RPM (mean number of reads per million)
...............ACUGAUUUCUUUUGGUGUUCAGA..................................................  1809      27.6
...............ACUGAUUUCUUUUGGUGUUCAGAGU................................................  735       8.76
...............ACUGAUUUCUUUUGGUGUUCAGAG.................................................  483       6.64
...............ACUGAUUUCUUUUGGUGUUCAG...................................................  427       5.43
...............ACUGAUUUCUUUUGGUGUUCA....................................................  300       1.1
...............ACUGAUUUCUUUUGGUGUUC.....................................................  52        0.337
...............ACUGAUUUCUUUUGGUGUU......................................................  38        0.683
...............ACUGAUUUCUUUUGGUGU.......................................................  5         0.0143
................CUGAUUUCUUUUGGUGUUCAGA..................................................  9         0.11
................CUGAUUUCUUUUGGUGUUC.....................................................  1         0.00227
................CUGAUUUCUUUUGGUGUUCAGAGU................................................  1         0.00369
.................UGAUUUCUUUUGGUGUUCAGAG.................................................  31        0.487
.................UGAUUUCUUUUGGUGUUCAGA..................................................  26        1.51
.................UGAUUUCUUUUGGUGUUCAGAGU................................................  9         0.0811
.................UGAUUUCUUUUGGUGUUCAG...................................................  1         0.00227
..................GAUUUCUUUUGGUGUUCAGA..................................................  2         0.0127
...................AUUUCUUUUGGUGUUCAGA..................................................  3         0.0153
...................AUUUCUUUUGGUGUUCAGAG.................................................  2         0.0143
...................AUUUCUUUUGGUGUUCAGAGU................................................  1         0.0104
...................AUUUCUUUUGGUGUUCAG...................................................  1         0.0118
....................UUUCUUUUGGUGUUCAGA..................................................  88        1.2
....................UUUCUUUUGGUGUUCAGAGU................................................  35        0.595
....................UUUCUUUUGGUGUUCAG...................................................  21        0.179
....................UUUCUUUUGGUGUUCAGAG.................................................  9         0.161
.....................UUCUUUUGGUGUUCAGA..................................................  395       8.13
.....................UUCUUUUGGUGUUCAGAGU................................................  72        0.878
.....................UUCUUUUGGUGUUCAGAG.................................................  50        0.487
......................UCUUUUGGUGUUCAGAG.................................................  1         0.00227
.......................CUUUUGGUGUUCAGAGU................................................  26        0.418
......................................GUCAAUAGAAUUUUCUAGCAC.............................  1         0.00271
...........................................UAGAAUUUUCUAGCACCAUCUGA......................  1         0.00741
................................................UUUUCUAGCACCAUCUGAAAUCGGUUA.............  1         0.00238
.................................................UUUCUAGCACCAUCUGAAAUCGG................  1         0.00343
..................................................UUCUAGCACCAUCUGAAAUCGGUU..............  3         0.125
..................................................UUCUAGCACCAUCUGAAAUCGGUUA.............  2         0.00455
..................................................UUCUAGCACCAUCUGAAAUCGG................  1         0.0025
..................................................UUCUAGCACCAUCUGAAAUCG.................  1         0.00238
..................................................UUCUAGCACCAUCUGAAAUC..................  1         0.00217
...................................................UCUAGCACCAUCUGAAAUCGGUUA.............  151       1.95
...................................................UCUAGCACCAUCUGAAAUCGGUU..............  135       1.35
...................................................UCUAGCACCAUCUGAAAUCGG................  26        0.12
...................................................UCUAGCACCAUCUGAAAUCGGU...............  24        0.403
...................................................UCUAGCACCAUCUGAAAUCGGUUAU............  9         0.176
...................................................UCUAGCACCAUCUGAAAUC..................  1         0.00227
....................................................CUAGCACCAUCUGAAAUCGGUU..............  44463     342
....................................................CUAGCACCAUCUGAAAUCGGUUA.............  24543     135
....................................................CUAGCACCAUCUGAAAUCGGU...............  5276      35.1
....................................................CUAGCACCAUCUGAAAUCGGUUAU............  3799      18.5
....................................................CUAGCACCAUCUGAAAUCGG................  2556      15.1
....................................................CUAGCACCAUCUGAAAUCG.................  1535      5.38
....................................................CUAGCACCAUCUGAAAUCGGUUAUA...........  62        0.243
....................................................CUAGCACCAUCUGAAAUC..................  23        0.286
....................................................CUAGCACCAUCUGAAAU...................  4         0.0611
....................................................CUAGCACCAUCUGAAAUCGGUUAUAAU.........  2         0.00446
.....................................................UAGCACCAUCUGAAAUCGGUUA.............  2021247   7.28e+03
.....................................................UAGCACCAUCUGAAAUCGGUU..............  484432    3.44e+03
.....................................................UAGCACCAUCUGAAAUCGGUUAU............  170211    645
.....................................................UAGCACCAUCUGAAAUCGGU...............  48787     324
.....................................................UAGCACCAUCUGAAAUCGG................  41324     219
.....................................................UAGCACCAUCUGAAAUCGGUUAUA...........  7419      24
.....................................................UAGCACCAUCUGAAAUCG.................  326       3.45
.....................................................UAGCACCAUCUGAAAUC..................  138       2.02
.....................................................UAGCACCAUCUGAAAUCGGUUAUAA..........  48        0.193
.....................................................UAGCACCAUCUGAAAUCGGUUAUAAU.........  30        0.095
.....................................................UAGCACCAUCUGAAAUCGGUUAUAAUG........  1         0.0021
......................................................AGCACCAUCUGAAAUCGGUUA.............  17106     82.9
......................................................AGCACCAUCUGAAAUCGGUU..............  5747      55.7
......................................................AGCACCAUCUGAAAUCGGUUAU............  1159      6.15
......................................................AGCACCAUCUGAAAUCGGU...............  475       4.82
......................................................AGCACCAUCUGAAAUCGG................  177       1.45
......................................................AGCACCAUCUGAAAUCGGUUAUA...........  41        0.11
......................................................AGCACCAUCUGAAAUCG.................  9         0.0456
.......................................................GCACCAUCUGAAAUCGGUUA.............  1667      6.21
.......................................................GCACCAUCUGAAAUCGGUU..............  450       3.58
.......................................................GCACCAUCUGAAAUCGGUUAU............  121       0.398
.......................................................GCACCAUCUGAAAUCGGU...............  26        0.452
.......................................................GCACCAUCUGAAAUCGG................  7         0.0614
.......................................................GCACCAUCUGAAAUCGGUUAUA...........  6         0.0316
........................................................CACCAUCUGAAAUCGGUUA.............  71        1.55
........................................................CACCAUCUGAAAUCGGUU..............  69        0.791
........................................................CACCAUCUGAAAUCGGUUAU............  7         0.0168
........................................................CACCAUCUGAAAUCGGU...............  6         0.164
........................................................CACCAUCUGAAAUCGGUUAUA...........  6         0.0183
.........................................................ACCAUCUGAAAUCGGUUA.............  1267      5.5
.........................................................ACCAUCUGAAAUCGGUUAU............  623       2.33
.........................................................ACCAUCUGAAAUCGGUU..............  278       2.79
.........................................................ACCAUCUGAAAUCGGUUAUA...........  8         0.0451
..........................................................CCAUCUGAAAUCGGUUA.............  100       2.32
..........................................................CCAUCUGAAAUCGGUUAUA...........  93        0.262
..........................................................CCAUCUGAAAUCGGUUAU............  12        0.0849
...........................................................CAUCUGAAAUCGGUUAU............  72        1.96
...........................................................CAUCUGAAAUCGGUUAUAA..........  1         0.00271
............................................................AUCUGAAAUCGGUUAUA...........  1         0.00227
ACCCCUUAGAGGAUGACUGAUUUCUUUUGGUGUUCAGAGUCAAUAGAAUUUUCUAGCACCAUCUGAAAUCGGUUAUAAUGAUUGGGGA
.((((.......((((((((((((...(((((((.((((...........)))))))))))...)))))))))))).......)))). (-35.14)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 27ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 4430ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 3164ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 253ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 409testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 2043testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 1985testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 260testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 12055brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 56748brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 64263brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 7196brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 260071brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 50whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 474whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 402whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 77whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 1128whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 1684whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 1912whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 1938whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 2129whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 1868whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 1859whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 6803whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 72embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 422embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 521embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 52embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 7174embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 27158embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 27551embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 1867embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 5066embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 16543embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 17943embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 18606bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 14085bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 13680spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 35462spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 79850spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 19273spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 58449spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 41326spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 11676spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 94209peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 13676spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 13491lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 16297lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 29224bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 63449bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 68441bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 53252peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 9967peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 19322bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 31396bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 18438spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 5453thymus GEO : GSM539856
ER0000000238 98255spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 124828spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 24492spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 84358lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 87569lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 156468lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 308200spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 219359lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 121678lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 7288 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 41272 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 9631heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 130175brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 58050lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 10927liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 67096kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 33950pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 18760skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 19877skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 37229salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 2151testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 11621ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 33403spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 75444lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).