Deep sequencing reads for mature sequence MIMAT0004583

Stem-loop ID mmu-mir-130b
Mature ID mmu-miR-130b-5p
Reads 
           mmu-miR-130b-5p                       mmu-miR-130b-3p                     Count     RPM (mean number of reads per million)
...........CACUCUUUCCCUGUUGCACUAC.................................................  31        0.55
...........CACUCUUUCCCUGUUGCACUACU................................................  16        0.351
...........CACUCUUUCCCUGUUGCACUA..................................................  14        0.185
...........CACUCUUUCCCUGUUGCACU...................................................  14        0.105
...........CACUCUUUCCCUGUUGCAC....................................................  4         0.0394
............ACUCUUUCCCUGUUGCACUACU................................................  4812      64.2
............ACUCUUUCCCUGUUGCACUAC.................................................  626       8.64
............ACUCUUUCCCUGUUGCACUA..................................................  278       2.01
............ACUCUUUCCCUGUUGCACU...................................................  186       1.97
............ACUCUUUCCCUGUUGCACUACUG...............................................  47        0.374
............ACUCUUUCCCUGUUGCAC....................................................  22        0.147
............ACUCUUUCCCUGUUGCACUACUGU..............................................  9         0.0751
............ACUCUUUCCCUGUUGCA.....................................................  1         0.00976
.............CUCUUUCCCUGUUGCACUACU................................................  17        0.0994
.............CUCUUUCCCUGUUGCACUAC.................................................  3         0.0158
.............CUCUUUCCCUGUUGCACUA..................................................  1         0.00244
..............UCUUUCCCUGUUGCACUACU................................................  50        0.36
..............UCUUUCCCUGUUGCACUAC.................................................  13        0.129
..............UCUUUCCCUGUUGCACU...................................................  6         0.0953
...............CUUUCCCUGUUGCACUACU................................................  15        0.156
...............CUUUCCCUGUUGCACUAC.................................................  4         0.0355
...............CUUUCCCUGUUGCACUA..................................................  1         0.0826
................UUUCCCUGUUGCACUACU................................................  9         0.156
................UUUCCCUGUUGCACUAC.................................................  4         0.119
.................UUCCCUGUUGCACUACU................................................  36        0.565
.........................................UCUGGGAAGCAGUGCAAUGAUGA..................  1         0.00349
...............................................AAGCAGUGCAAUGAUGAAAGGG.............  4         0.132
...............................................AAGCAGUGCAAUGAUGAAAGGGC............  2         0.0134
...............................................AAGCAGUGCAAUGAUGAAAGGGCA...........  1         0.0106
.................................................GCAGUGCAAUGAUGAAAGGGCA...........  4         0.0137
.................................................GCAGUGCAAUGAUGAAAGGGCAU..........  2         0.00758
.................................................GCAGUGCAAUGAUGAAAGGG.............  2         0.00546
.................................................GCAGUGCAAUGAUGAAAGGGC............  1         0.00538
.................................................GCAGUGCAAUGAUGAAAGG..............  1         0.0076
..................................................CAGUGCAAUGAUGAAAGGGCAU..........  48844     270
..................................................CAGUGCAAUGAUGAAAGGGCA...........  6959      33.8
..................................................CAGUGCAAUGAUGAAAGGG.............  4542      19.6
..................................................CAGUGCAAUGAUGAAAGGGC............  4218      22.3
..................................................CAGUGCAAUGAUGAAAGG..............  173       2.36
..................................................CAGUGCAAUGAUGAAAGGGCAUC.........  156       0.763
..................................................CAGUGCAAUGAUGAAAG...............  26        0.608
..................................................CAGUGCAAUGAUGAAAGGGCAUCU........  12        0.0432
..................................................CAGUGCAAUGAUGAAAGGGCAUCUGU......  5         0.0877
..................................................CAGUGCAAUGAUGAAAGGGCAUCUG.......  2         0.0103
...................................................AGUGCAAUGAUGAAAGGGCAU..........  871       5.44
...................................................AGUGCAAUGAUGAAAGGGCA...........  153       0.899
...................................................AGUGCAAUGAUGAAAGGGC............  69        0.51
...................................................AGUGCAAUGAUGAAAGGG.............  9         0.101
...................................................AGUGCAAUGAUGAAAGGGCAUC.........  7         0.031
...................................................AGUGCAAUGAUGAAAGG..............  4         0.0994
...................................................AGUGCAAUGAUGAAAGGGCAUCU........  1         0.0076
....................................................GUGCAAUGAUGAAAGGGCA...........  5         0.0309
....................................................GUGCAAUGAUGAAAGGGCAU..........  4         0.0105
....................................................GUGCAAUGAUGAAAGGGC............  2         0.0504
....................................................GUGCAAUGAUGAAAGGG.............  1         0.0103
.....................................................UGCAAUGAUGAAAGGGCAU..........  8         0.0462
......................................................GCAAUGAUGAAAGGGCAU..........  9         0.185
......................................................GCAAUGAUGAAAGGGCA...........  3         0.0306
.......................................................CAAUGAUGAAAGGGCAU..........  4         0.0482
GGCUUGUUGGACACUCUUUCCCUGUUGCACUACUGUGGGCCUCUGGGAAGCAGUGCAAUGAUGAAAGGGCAUCUGUCGGGCC
((((((.((((..(((((((..(((((((((.((.....((....)).)).)))))))))..)))))))..)))).)))))) (-32.10)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 30ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 25ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000032 6testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 35testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 41testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 5testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 17brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 93brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 117brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 7brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 479brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 8whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 80whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 57whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 9whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 278whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 305whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 350whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 305whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 265whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 300whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 273whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 1233whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 420embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 2608embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 2875embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 347embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 57embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 217embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 180embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 16embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 269embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 838embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 1009embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 3537bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 3523bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 1942spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 565spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 901spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 1961spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 2385spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 1685spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 1792spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 876peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 483spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 962lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 289lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 2723bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 383bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 1067bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 794peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 145peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 707bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 169bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 1064spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 2535thymus GEO : GSM539856
ER0000000238 396spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 1124spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 1517spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 2530lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 1893lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 2320lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 2799spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 2064lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 410lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 9270 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 365 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 3heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 86brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 30lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 7liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 18kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 402pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 135skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 332skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 266salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 23testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 65ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 1232spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 3273lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).