Deep sequencing reads for mature sequence MIMAT0004579

Stem-loop ID mmu-mir-302a
Mature ID mmu-miR-302a-5p
Reads 
    mmu-miR-302a-5p                       mmu-miR-302a-3p              Count     RPM (mean number of reads per million)
.....ACUUAAACGUGGUUGUACUUGCU.........................................  76        2.35
.....ACUUAAACGUGGUUGUACUUGC..........................................  30        1.39
.....ACUUAAACGUGGUUGUACUUG...........................................  21        0.769
.....ACUUAAACGUGGUUGUACUU............................................  10        0.282
.....ACUUAAACGUGGUUGUACUUGCUU........................................  5         0.132
.....ACUUAAACGUGGUUGUACU.............................................  1         0.0264
.......UUAAACGUGGUUGUACUUGCU.........................................  1         0.0264
........UAAACGUGGUUGUACUUGCUUU.......................................  52        1.99
........UAAACGUGGUUGUACUUGCUU........................................  16        0.701
........UAAACGUGGUUGUACUUGCU.........................................  13        0.365
........UAAACGUGGUUGUACUUGC..........................................  3         0.2
........UAAACGUGGUUGUACUUG...........................................  2         0.0906
........UAAACGUGGUUGUACUUGCUUUA......................................  1         0.0264
.........AAACGUGGUUGUACUUGCUUUA......................................  1         0.0359
..........AACGUGGUUGUACUUGCUUU.......................................  2         0.156
..........................................GUAAGUGCUUCCAUGUUUUGGU.....  2         0.167
...........................................UAAGUGCUUCCAUGUUUUGGUGA...  426       22.6
...........................................UAAGUGCUUCCAUGUUUUGGUG....  111       7.32
...........................................UAAGUGCUUCCAUGUUUUGGU.....  38        1.82
...........................................UAAGUGCUUCCAUGUUUUGG......  12        0.393
...........................................UAAGUGCUUCCAUGUUUUG.......  9         0.238
...........................................UAAGUGCUUCCAUGUUUUGGUGAU..  8         0.476
............................................AAGUGCUUCCAUGUUUUGGUGA...  159       9.15
............................................AAGUGCUUCCAUGUUUUGGUG....  11        0.709
............................................AAGUGCUUCCAUGUUUUGGUGAU..  2         0.0791
............................................AAGUGCUUCCAUGUUUUGG......  1         0.0264
.............................................AGUGCUUCCAUGUUUUGGUGA...  4         0.156
...............................................UGCUUCCAUGUUUUGGUGA...  4         0.165
................................................GCUUCCAUGUUUUGGUGA...  3         0.386
.................................................CUUCCAUGUUUUGGUGA...  17        1.15
..................................................UUCCAUGUUUUGGUGAU..  2         0.0823
CCACCACUUAAACGUGGUUGUACUUGCUUUAGACCUAAGAAAGUAAGUGCUUCCAUGUUUUGGUGAUGG
(((.((((.((((((((..(((((((((((.........)))))))))))..)))))))).)))).))) (-30.90)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000038 1brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000040 3brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000043 1whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000045 2whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 3whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 5whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 5whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 3whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 6whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 1whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 16whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 22embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 81embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 93embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 19embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 84embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 204embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 201embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 25embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 81embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 220embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 295embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000247 315 GEO : GSM539866 strain: C57BL/6-129
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).