Deep sequencing reads for mature sequence MIMAT0004544

Stem-loop ID mmu-mir-193a
Mature ID mmu-miR-193a-5p
Reads 
     mmu-miR-193a-5p                   mmu-miR-193a-3p               Count     RPM (mean number of reads per million)
GAGAGCUGGGUCUUUGCGGG..............................................  1         0.0126
.AGAGCUGGGUCUUUGCGGGCAA...........................................  3         0.0074
.AGAGCUGGGUCUUUGCGGG..............................................  1         0.00289
.AGAGCUGGGUCUUUGCGGGCA............................................  1         0.00289
...AGCUGGGUCUUUGCGGGCAAGA.........................................  6         0.112
...AGCUGGGUCUUUGCGGGCAAG..........................................  2         0.00223
.....CUGGGUCUUUGCGGGCAAGAUGA......................................  4         0.0301
.....CUGGGUCUUUGCGGGCAAGAUG.......................................  1         0.0356
......UGGGUCUUUGCGGGCAAGAUGA......................................  2917      51.8
......UGGGUCUUUGCGGGCAAGAUG.......................................  295       4.1
......UGGGUCUUUGCGGGCAAGAU........................................  128       2.15
......UGGGUCUUUGCGGGCAAGA.........................................  22        0.275
......UGGGUCUUUGCGGGCAAGAUGAG.....................................  13        0.692
......UGGGUCUUUGCGGGCAAGAUGAGA....................................  4         0.0276
......UGGGUCUUUGCGGGCAAG..........................................  3         0.0602
......UGGGUCUUUGCGGGCAA...........................................  1         0.0356
.......GGGUCUUUGCGGGCAAGAUGA......................................  15        0.236
.......GGGUCUUUGCGGGCAAGAUG.......................................  4         0.0482
.......GGGUCUUUGCGGGCAAGAUGAG.....................................  2         0.0398
.......GGGUCUUUGCGGGCAAGAU........................................  1         0.00112
........GGUCUUUGCGGGCAAGAUG.......................................  1         0.00274
.........GUCUUUGCGGGCAAGAUGA......................................  4         0.0737
..........UCUUUGCGGGCAAGAUGA......................................  2         0.00547
...........CUUUGCGGGCAAGAUGA......................................  48        0.768
...................................AGUUCAACUGGCCUACAAAGUCCCAGU....  1         0.0356
....................................GUUCAACUGGCCUACAAAGUCCCAGU....  1         0.0111
......................................UCAACUGGCCUACAAAGUCCCA......  11        0.114
......................................UCAACUGGCCUACAAAGUCCCAGU....  6         0.0608
......................................UCAACUGGCCUACAAAGUCC........  1         0.0135
......................................UCAACUGGCCUACAAAGUC.........  1         0.0356
......................................UCAACUGGCCUACAAAGUCCCAG.....  1         0.0135
.......................................CAACUGGCCUACAAAGUCCCAG.....  8         0.172
.......................................CAACUGGCCUACAAAGUCCCAGU....  4         0.0428
.......................................CAACUGGCCUACAAAGUCCCA......  2         0.0221
.......................................CAACUGGCCUACAAAGUCC........  1         0.0356
........................................AACUGGCCUACAAAGUCCCAGU....  4890      60.4
........................................AACUGGCCUACAAAGUCCCAG.....  3550      48.1
........................................AACUGGCCUACAAAGUCCCA......  2352      20.6
........................................AACUGGCCUACAAAGUCCC.......  442       5.72
........................................AACUGGCCUACAAAGUCC........  257       3.85
........................................AACUGGCCUACAAAGUC.........  88        1.32
........................................AACUGGCCUACAAAGUCCCAGUC...  30        0.185
........................................AACUGGCCUACAAAGUCCCAGUCC..  2         0.0151
.........................................ACUGGCCUACAAAGUCCCA......  77        1.05
.........................................ACUGGCCUACAAAGUCCCAGU....  41        0.482
.........................................ACUGGCCUACAAAGUCCCAG.....  17        0.286
.........................................ACUGGCCUACAAAGUCCC.......  4         0.0737
.........................................ACUGGCCUACAAAGUCCCAGUC...  3         0.0381
.........................................ACUGGCCUACAAAGUCC........  3         0.0357
..........................................CUGGCCUACAAAGUCCCAGU....  49        1.02
..........................................CUGGCCUACAAAGUCCCA......  6         0.0586
..........................................CUGGCCUACAAAGUCCC.......  3         0.0577
..........................................CUGGCCUACAAAGUCCCAG.....  2         0.0221
...........................................UGGCCUACAAAGUCCCAGU....  1398      24.5
...........................................UGGCCUACAAAGUCCCAG.....  23        0.316
...........................................UGGCCUACAAAGUCCCA......  3         0.0332
...........................................UGGCCUACAAAGUCCCAGUCC..  1         0.0111
............................................GGCCUACAAAGUCCCAGU....  12        0.175
............................................GGCCUACAAAGUCCCAG.....  2         0.0261
.............................................GCCUACAAAGUCCCAGU....  5         0.318
GAGAGCUGGGUCUUUGCGGGCAAGAUGAGAGUGUCAGUUCAACUGGCCUACAAAGUCCCAGUCCUC
(((..(((((.(((((..(((.((.((((........)))).)).)))..))))).)))))..))) (-32.00)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 128ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 87ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 10ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 4testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 16testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 21testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 2testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 20brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 85brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 95brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 13brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 393brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 11whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 117whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 96whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 17whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 365whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 467whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 552whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 434whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 513whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 505whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 497whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 1813whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 23embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 180embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 172embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 24embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 925embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 3220embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 3151embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 252embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 1761embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 4948embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 5479embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 11bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 1bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 6spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 1spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 25spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 124spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 68spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 16spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 4peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 1spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 131bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 242bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 13bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 113peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 19peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 77bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 136bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 111spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000238 2spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 4spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 7spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 109lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 159lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 7lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 463spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 8lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 12lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 156 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 425 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 5heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 28brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 152lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 149liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 472kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 419pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 293skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 53skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 283salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 3testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 88ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 9spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 1lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).