Deep sequencing reads for mature sequence MIMAT0004496

Stem-loop ID hsa-mir-23a
Mature ID hsa-miR-23a-5p
Reads 
        hsa-miR-23a-5p                     hsa-miR-23a-3p                  Count     RPM (mean number of reads per million)
.......UGGGGUUCCUGGGGAUGGGAUU............................................  29        0.35
.......UGGGGUUCCUGGGGAUGGGAU.............................................  10        0.0974
.......UGGGGUUCCUGGGGAUGGGAUUU...........................................  8         0.0823
........GGGGUUCCUGGGGAUGGGAUUU...........................................  215       2.97
........GGGGUUCCUGGGGAUGGGAUU............................................  34        0.334
........GGGGUUCCUGGGGAUGGGAU.............................................  10        2.08
..........................................AAAUCACAUUGCCAGGGAUUUCCA.......  403       716
..........................................AAAUCACAUUGCCAGGGAUUUCC........  348       748
..........................................AAAUCACAUUGCCAGGGAUUUCCAA......  77        109
..........................................AAAUCACAUUGCCAGGGAUUUCCAAC.....  75        112
..........................................AAAUCACAUUGCCAGGGAUUUC.........  67        175
..........................................AAAUCACAUUGCCAGGGAUUU..........  46        113
..........................................AAAUCACAUUGCCAGGGAUU...........  23        83.5
..........................................AAAUCACAUUGCCAGGGAU............  9         16
..........................................AAAUCACAUUGCCAGGGA.............  3         5.09
..........................................AAAUCACAUUGCCAGGG..............  2         19.1
...........................................AAUCACAUUGCCAGGGAUUUCCA.......  148       2.46
...........................................AAUCACAUUGCCAGGGAUUUCC........  86        63.8
...........................................AAUCACAUUGCCAGGGAUUU..........  69        29.2
...........................................AAUCACAUUGCCAGGGAUUUC.........  45        12.5
...........................................AAUCACAUUGCCAGGGAUUUCCAA......  23        0.279
...........................................AAUCACAUUGCCAGGGAUU...........  7         0.103
...........................................AAUCACAUUGCCAGGGAU............  6         2.65
............................................AUCACAUUGCCAGGGAUUUCCA.......  28827     426
............................................AUCACAUUGCCAGGGAUUUCCAA......  13214     173
............................................AUCACAUUGCCAGGGAUUUCC........  6167      2.42e+03
............................................AUCACAUUGCCAGGGAUUUC.........  5293      571
............................................AUCACAUUGCCAGGGAUUU..........  4248      826
............................................AUCACAUUGCCAGGGAUU...........  838       263
............................................AUCACAUUGCCAGGGAU............  129       47.6
............................................AUCACAUUGCCAGGGAUUUCCAAC.....  46        0.505
.............................................UCACAUUGCCAGGGAUUUCCAA......  128       2.15
.............................................UCACAUUGCCAGGGAUUUCCA.......  118       5.03
.............................................UCACAUUGCCAGGGAUUUCCAAC.....  62        1.86
.............................................UCACAUUGCCAGGGAUUUCC........  48        23.3
.............................................UCACAUUGCCAGGGAUUUC.........  9         0.0801
.............................................UCACAUUGCCAGGGAUUU..........  8         7.77
.............................................UCACAUUGCCAGGGAUUUCCAACC....  3         0.02
.............................................UCACAUUGCCAGGGAUU...........  1         1.29
..............................................CACAUUGCCAGGGAUUUC.........  1         0.164
..............................................CACAUUGCCAGGGAUUUCCA.......  1         0.164
...............................................ACAUUGCCAGGGAUUUCCA.......  66        0.789
...............................................ACAUUGCCAGGGAUUUCCAA......  48        0.6
...............................................ACAUUGCCAGGGAUUUCC........  21        0.274
...............................................ACAUUGCCAGGGAUUUC.........  13        0.223
.................................................AUUGCCAGGGAUUUCCA.......  2         0.0282
GGCCGGCUGGGGUUCCUGGGGAUGGGAUUUGCUUCCUGUCACAAAUCACAUUGCCAGGGAUUUCCAACCGACC
((.(((.((((((((((((.((((.((((((..........)))))).)))).))))))).))))).))).)) (-33.20)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000001 19embryonic stem cell GEO : GSM541796 [ Bar M et al.]
ER0000000002 1254embryonic stem cell GEO : GSM541797 [ Bar M et al.]
ER0000000103 6402melanoblast GEO : GSM458535 [ Stark MS et al.]
ER0000000104 1006melanocyte GEO : GSM458536 [ Stark MS et al.]
ER0000000105 12254 GEO : GSM458537 cell line: primary giant congental nevus [ Stark MS et al.]
ER0000000106 965melanoma GEO : GSM458538 cell line: secondary acral melanoma [ Stark MS et al.]
ER0000000107 2730melanoma GEO : GSM458539 cell line: secondary mucosal melanoma [ Stark MS et al.]
ER0000000108 15125melanoma GEO : GSM458540 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000109 2660melanoma GEO : GSM458541 cell line: primary uveal melanoma [ Stark MS et al.]
ER0000000110 6779melanoma GEO : GSM458542 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000111 9228melanoma GEO : GSM458543 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000112 5937melanoma GEO : GSM458544 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000113 5634melanoma GEO : GSM458545 cell line: secondary cutaneous melanoma from a chronically sun-damaged body site [ Stark MS et al.]
ER0000000114 3658melanoma GEO : GSM458546 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000135 6 GEO : GSM532871 normal cervix [ Witten D et al.]
ER0000000137 5 GEO : GSM532873 normal cervix [ Witten D et al.]
ER0000000139 84 GEO : GSM532875 normal cervix [ Witten D et al.]
ER0000000141 19 GEO : GSM532877 normal cervix [ Witten D et al.]
ER0000000143 7 GEO : GSM532879 normal cervix [ Witten D et al.]
ER0000000145 3 GEO : GSM532881 normal cervix [ Witten D et al.]
ER0000000147 2 GEO : GSM532883 normal cervix [ Witten D et al.]
ER0000000149 129 GEO : GSM532885 normal cervix [ Witten D et al.]
ER0000000151 4 GEO : GSM532887 normal cervix [ Witten D et al.]
ER0000000155 1029 GEO : GSM532891 normal cervix [ Witten D et al.]
ER0000000157 2 GEO : GSM532893 normal cervix [ Witten D et al.]
ER0000000159 1514 GEO : GSM532895 normal cervix [ Witten D et al.]
ER0000000160 1squamous cell GEO : GSM532896 [ Witten D et al.]
ER0000000161 2 GEO : GSM532897 normal cervix [ Witten D et al.]
ER0000000163 1353 GEO : GSM532899 normal cervix [ Witten D et al.]
ER0000000165 2 GEO : GSM532901 normal cervix [ Witten D et al.]
ER0000000167 1424 GEO : GSM532903 normal cervix [ Witten D et al.]
ER0000000169 2 GEO : GSM532905 normal cervix [ Witten D et al.]
ER0000000171 6 GEO : GSM532907 normal cervix [ Witten D et al.]
ER0000000173 1310 GEO : GSM532909 normal cervix [ Witten D et al.]
ER0000000175 1 GEO : GSM532911 normal cervix [ Witten D et al.]
ER0000000176 1adenosquamous cell GEO : GSM532912 [ Witten D et al.]
ER0000000177 2090 GEO : GSM532913 normal cervix [ Witten D et al.]
ER0000000179 642 GEO : GSM532915 normal cervix [ Witten D et al.]
ER0000000180 2squamous cell GEO : GSM532916 [ Witten D et al.]
ER0000000181 3 GEO : GSM532917 normal cervix [ Witten D et al.]
ER0000000184 1squamous cell GEO : GSM532920 [ Witten D et al.]
ER0000000185 1455 GEO : GSM532921 normal cervix [ Witten D et al.]
ER0000000187 492 GEO : GSM532923 normal cervix [ Witten D et al.]
ER0000000188 2squamous cell GEO : GSM532924 [ Witten D et al.]
ER0000000189 1whole body GEO : GSM532925 normal cervix [ Witten D et al.]
ER0000000190 1squamous cell GEO : GSM532926 [ Witten D et al.]
ER0000000193 19 GEO : GSM532929 normal cervix [ Witten D et al.]
ER0000000194 6squamous cell GEO : GSM532930 [ Witten D et al.]
ER0000000262 231 GEO : GSM337570 antibody: anti-Ago1 4B8
ER0000000263 75 GEO : GSM337571 antibody: anti-Ago2 11A9
ER0000000264 3425 GEO : GSM368181 tissue: undifferentiated NPC [ Zhu JY et al.]
ER0000000265 84 GEO : GSM368182 tissue: clinically negative of NPC [ Zhu JY et al.]
ER0000000266 344 GEO : GSM368183 tissue: undifferentiated NPC [ Zhu JY et al.]
ER0000000267 41 GEO : GSM368184 tissue: clinically negative of NPC [ Zhu JY et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).
2
PMID:19144710 "Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas" Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G J Virol. 83:3333-3341(2009).
3
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
4
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).