Deep sequencing reads for mature sequence MIMAT0004380

Stem-loop ID

ppt-MIR904b

Mature ID

ppt-miR904b

Reads

                                                    ppt-miR904b                                                                                                                                                              Count     RPM (mean number of reads per million)
................................................GGUCUUGUCAAUGUUUAGGGG.......................................................................................................................................................  1         3.98
................................................GGUCUUGUCAAUGUUUAGGG........................................................................................................................................................  1         3.98
..................................................UCUUGUCAAUGUUUAGGGGCA.....................................................................................................................................................  2357      1.04e+04
..................................................UCUUGUCAAUGUUUAGGGGC......................................................................................................................................................  98        422
..................................................UCUUGUCAAUGUUUAGGGGCAA....................................................................................................................................................  38        205
..................................................UCUUGUCAAUGUUUAGG.........................................................................................................................................................  4         15.2
..................................................UCUUGUCAAUGUUUAGGG........................................................................................................................................................  2         7.21
...................................................CUUGUCAAUGUUUAGGGGCA.....................................................................................................................................................  275       1.19e+03
...................................................CUUGUCAAUGUUUAGGGGCAA....................................................................................................................................................  8         56
...................................................CUUGUCAAUGUUUAGGG........................................................................................................................................................  2         20
...................................................CUUGUCAAUGUUUAGGGGC......................................................................................................................................................  1         3.98
....................................................UUGUCAAUGUUUAGGGGCA.....................................................................................................................................................  11        55.1
....................................................UUGUCAAUGUUUAGGGGCAA....................................................................................................................................................  6         23.1
.....................................................UGUCAAUGUUUAGGGGCA.....................................................................................................................................................  21        102
.....................................................UGUCAAUGUUUAGGGGCAA....................................................................................................................................................  1         3.98
.....................................................UGUCAAUGUUUAGGGGC......................................................................................................................................................  1         3.98
......................................................GUCAAUGUUUAGGGGCA.....................................................................................................................................................  4         15.9
................................................................................................GUGCGAGCUCUUGAUCGC..........................................................................................................  1         3.98
......................................................................................................................GUGUUGCUAGUGCCCUCC....................................................................................  1         3.23
......................................................................................................................GUGUUGCUAGUGCCCUCCA...................................................................................  1         3.23
.......................................................................................................................UGUUGCUAGUGCCCUCC....................................................................................  1         3.23
......................................................................................................................................CCACCCCUAAAUGUUGGCAAGACC..............................................................  1         3.98
........................................................................................................................................ACCCCUAAAUGUUGGCAAGAC...............................................................  12        58.3
........................................................................................................................................ACCCCUAAAUGUUGGCAAGACC..............................................................  3         11.9
.........................................................................................................................................CCCCUAAAUGUUGGCAAGACC..............................................................  971       4.3e+03
.........................................................................................................................................CCCCUAAAUGUUGGCAAGAC...............................................................  23        81
.........................................................................................................................................CCCCUAAAUGUUGGCAAGA................................................................  3         11.2
.........................................................................................................................................CCCCUAAAUGUUGGCAAG.................................................................  3         11.9
.........................................................................................................................................CCCCUAAAUGUUGGCAA..................................................................  1         3.98
..........................................................................................................................................CCCUAAAUGUUGGCAAGACC..............................................................  184       918
..........................................................................................................................................CCCUAAAUGUUGGCAAGAC...............................................................  27        162
...........................................................................................................................................CCUAAAUGUUGGCAAGACC..............................................................  2         20
...........................................................................................................................................CCUAAAUGUUGGCAAGAC...............................................................  1         3.98
............................................................................................................................................CUAAAUGUUGGCAAGACC..............................................................  18        71.7
............................................................................................................................................CUAAAUGUUGGCAAGAC...............................................................  3         11.9
............................................................................................................................................CUAAAUGUUGGCAAGACCUAA...........................................................  2         32.1
.............................................................................................................................................UAAAUGUUGGCAAGACC..............................................................  7         39.9
CUUUGGAGCGAUGUGUGUCAUGAUGGCGGUAUUUUGUGAUGCUAAUACGGUCUUGUCAAUGUUUAGGGGCAAAGGUGCAACUAUGCAACAUCCCUGGUGCGAGCUCUUGAUCGCGUAAGUGUUGCUAGUGCCCUCCACCCCUAAAUGUUGGCAAGACCUAAUUGGCGCACAACAUUGGGACCGACGCUGGAUCAGCAGAAGUCAAAAGACACAAUUGUGA
.......(((((.((((((.((((..((((...(((((.(((((((..(((((((((((((((((((((...(((.(((.(((.((((((...((..(((((........)))))..)))))))))))))))))...)))))))))))))))))))))..)))))))))))).......))))..((((...))))....))))...))))))))))).. (-93.30)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000213	590	whole body	GEO : GSM115095	7 day wild-type protonemata	[ Axtell MJ et al.]
ER0000000214	3094	gametophore	GEO : GSM115096	14 day old wild-type P. patens -- Protonemata and young Gametophores	[ Axtell MJ et al.]
ER0000000215	3084	gametophore	GEO : GSM115097	~60 day old wild-type mature gametophores and sporophytes	[ Axtell MJ et al.]

References

1. PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).