Deep sequencing reads for mature sequence MIMAT0004080

Stem-loop ID osa-MIR820b
Mature ID osa-miR820b
Reads
           osa-miR820b                                                                                                                                                                                    Count     RPM (mean number of reads per million)
.....UGCGUCGGCCUCGUGGAUGGACCA............................................................................................................................................................................  2         23.7
.......CGUCGGCCUCGUGGAUGGACCAGG..........................................................................................................................................................................  2         23.7
........GUCGGCCUCGUGGAUGGACCAGG..........................................................................................................................................................................  1         11.8
.........UCGGCCUCGUGGAUGGACCAGGAG........................................................................................................................................................................  116       845
.........UCGGCCUCGUGGAUGGACCAGG..........................................................................................................................................................................  75        396
.........UCGGCCUCGUGGAUGGACCAGGA.........................................................................................................................................................................  66        273
.........UCGGCCUCGUGGAUGGACCAG...........................................................................................................................................................................  53        147
.........UCGGCCUCGUGGAUGGACCA............................................................................................................................................................................  20        4.81
.........UCGGCCUCGUGGAUGGACC.............................................................................................................................................................................  19        4.48
.........UCGGCCUCGUGGAUGGAC..............................................................................................................................................................................  1         11.8
.........UCGGCCUCGUGGAUGGACCAGGAGC.......................................................................................................................................................................  1         11.8
..........CGGCCUCGUGGAUGGACCAGGAG........................................................................................................................................................................  47        22.8
..........CGGCCUCGUGGAUGGACCAGGAGC.......................................................................................................................................................................  24        5.65
..........CGGCCUCGUGGAUGGACCAGGA.........................................................................................................................................................................  22        5.29
...........GGCCUCGUGGAUGGACCAGGAG........................................................................................................................................................................  45        22.3
...........GGCCUCGUGGAUGGACCAG...........................................................................................................................................................................  19        4.48
...................GGAUGGACCAGGAGCUCGACGUU...............................................................................................................................................................  23        5.42
...................GGAUGGACCAGGAGCUCGACGU................................................................................................................................................................  22        5.29
...............................AGCUCGACGUUCCUUAAGGCCGUU..................................................................................................................................................  24        5.77
.................................CUCGACGUUCCUUAAGGCCGUUCUU...............................................................................................................................................  25        5.89
.................................CUCGACGUUCCUUAAGGCCGUUCUUU..............................................................................................................................................  1         11.8
............................................UUAAGGCCGUUCUUUCCGACCCAU.....................................................................................................................................  24        5.65
............................................UUAAGGCCGUUCUUUCCGACCCA......................................................................................................................................  23        5.42
............................................UUAAGGCCGUUCUUUCCGACC........................................................................................................................................  21        5.05
.............................................UAAGGCCGUUCUUUCCGACCC.......................................................................................................................................  21        4.95
.........................................................UUCCGACCCAUACAAGGUUCC...........................................................................................................................  2         26.8
.........................................................UUCCGACCCAUACAAGGUUCCG..........................................................................................................................  1         11.8
..........................................................UCCGACCCAUACAAGGUUCCGU.........................................................................................................................  29        88.2
..........................................................UCCGACCCAUACAAGGUUCCG..........................................................................................................................  25        61.8
..........................................................UCCGACCCAUACAAGGUUCCGUCG.......................................................................................................................  24        5.65
..........................................................UCCGACCCAUACAAGGUUCC...........................................................................................................................  20        4.81
..........................................................UCCGACCCAUACAAGGUUCCGUC........................................................................................................................  1         11.8
..........................................................UCCGACCCAUACAAGGUUC............................................................................................................................  1         11.8
..................................................................................................................GCAGGAAGUGGAACCUUGUUAAGGUCGGAA.........................................................  30        7.21
....................................................................................................................AGGAAGUGGAACCUUGUUAAGGUCGGAAC........................................................  29        6.97
......................................................................................................................GAAGUGGAACCUUGUUAAGGUCGG...........................................................  24        5.77
.......................................................................................................................AAGUGGAACCUUGUUAAGGUCGGAAC........................................................  26        6.25
.......................................................................................................................AAGUGGAACCUUGUUAAGGUCGGA..........................................................  24        5.77
.......................................................................................................................AAGUGGAACCUUGUUAAGG...............................................................  19        4.48
........................................................................................................................AGUGGAACCUUGUUAAGGUCGGAAC........................................................  25        6.01
........................................................................................................................AGUGGAACCUUGUUAAGGUCGGAA.........................................................  1         15
.........................................................................................................................GUGGAACCUUGUUAAGGUCGGAAC........................................................  48        11.4
.........................................................................................................................GUGGAACCUUGUUAAGGUCGGAA.........................................................  25        35.5
..........................................................................................................................UGGAACCUUGUUAAGGUCGGAACG.......................................................  24        5.65
..........................................................................................................................UGGAACCUUGUUAAGGUCGGAA.........................................................  22        5.29
..........................................................................................................................UGGAACCUUGUUAAGGUCGGAAC........................................................  3         38.7
...........................................................................................................................GGAACCUUGUUAAGGUCGGAAC........................................................  23        20.3
.............................................................................................................................AACCUUGUUAAGGUCGGAACGAAC....................................................  48        11.4
..............................................................................................................................ACCUUGUUAAGGUCGGAACGAACU...................................................  24        5.65
..............................................................................................................................ACCUUGUUAAGGUCGGAACGAA.....................................................  22        5.18
...............................................................................................................................CCUUGUUAAGGUCGGAACGAA.....................................................  21        4.95
................................................................................................................................CUUGUUAAGGUCGGAACGAACUG..................................................  23        5.42
.................................................................................................................................UUGUUAAGGUCGGAACGAA.....................................................  38        9.04
.................................................................................................................................UUGUUAAGGUCGGAACGAACUGC.................................................  23        5.42
.................................................................................................................................UUGUUAAGGUCGGAACGAACUG..................................................  22        5.18
.....................................................................................................................................UAAGGUCGGAACGAACUGCCUUA.............................................  2         26.8
.......................................................................................................................................AGGUCGGAACGAACUGCCUUAAGG..........................................  25        17.6
........................................................................................................................................GGUCGGAACGAACUGCCUUAAGGA.........................................  48        11.4
..........................................................................................................................................UCGGAACGAACUGCCUUAAGGAA........................................  46        10.9
..........................................................................................................................................UCGGAACGAACUGCCUUAAGG..........................................  21        5.05
...........................................................................................................................................CGGAACGAACUGCCUUAAGGAA........................................  22        5.18
..............................................................................................................................................AACGAACUGCCUUAAGGAAGUCGA...................................  48        11.4
...............................................................................................................................................ACGAACUGCCUUAAGGAAGUCGAU..................................  24        5.65
...............................................................................................................................................ACGAACUGCCUUAAGGAAGUCGA...................................  1         11.8
.................................................................................................................................................GAACUGCCUUAAGGAAGUCGAUGC................................  210       2.32e+03
.................................................................................................................................................GAACUGCCUUAAGGAAGUCGAUGCU...............................  61        155
.................................................................................................................................................GAACUGCCUUAAGGAAGUCGAUG.................................  57        151
.................................................................................................................................................GAACUGCCUUAAGGAAGUCGAU..................................  1         11.8
.................................................................................................................................................GAACUGCCUUAAGGAAGUCGA...................................  1         11.8
.................................................................................................................................................GAACUGCCUUAAGGAAGUCG....................................  1         11.8
..................................................................................................................................................AACUGCCUUAAGGAAGUCGAUGCU...............................  54        82.5
..................................................................................................................................................AACUGCCUUAAGGAAGUCGAUGCUU..............................  50        11.9
..................................................................................................................................................AACUGCCUUAAGGAAGUCGAUGC................................  38        193
..................................................................................................................................................AACUGCCUUAAGGAAGUCGAUG.................................  23        17
...................................................................................................................................................ACUGCCUUAAGGAAGUCGAUGC................................  3         45
..............................................................................................................................................................GAAGUCGAUGCUUUAGGUCCGUCCA..................  25        5.89
...............................................................................................................................................................AAGUCGAUGCUUUAGGUCCGUCCA..................  48        11.4
...............................................................................................................................................................AAGUCGAUGCUUUAGGUCCGUCCACG................  26        6.25
...............................................................................................................................................................AAGUCGAUGCUUUAGGUCCGUCCAC.................  25        6.01
................................................................................................................................................................AGUCGAUGCUUUAGGUCCGUCCACG................  50        11.9
.................................................................................................................................................................GUCGAUGCUUUAGGUCCGUCCAC.................  23        5.53
..........................................................................................................................................................................UUAGGUCCGUCCACGAGGACGACG.......  24        5.65
............................................................................................................................................................................AGGUCCGUCCACGAGGACGACGCA.....  24        5.65
............................................................................................................................................................................AGGUCCGUCCACGAGGACGACG.......  22        5.18
GUACAUGCGUCGGCCUCGUGGAUGGACCAGGAGCUCGACGUUCCUUAAGGCCGUUCUUUCCGACCCAUACAAGGUUCCGUCGCCUGCAUUGUUCCAAGAGUGUCUUGGACGAAAGCAGGAAGUGGAACCUUGUUAAGGUCGGAACGAACUGCCUUAAGGAAGUCGAUGCUUUAGGUCCGUCCACGAGGACGACGCAGCUAG
.....(((((((.(((((((((((((((..(((((((((.(((((((((((.((((.((((((((...((((((((((((..(((((.((((.(((((.....)))))))))..)))))..))))))))))))...)))))))).)))).)))))))))))))))).))))..))))))))))))))).)))))))..... (-136.70)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000008 102whole body GEO : GSM407071 [ Johnson C et al.]
ER0000000009 378whole body GEO : GSM407072 [ Johnson C et al.]
ER0000000201 2025whole body GEO : GSM571077 strain: indica 93-11, age: 12-day-old, stress: control [ Li T et al.]
ER0000000202 2586whole body GEO : GSM571078 strain: indica 93-11, stress: H2O2 [ Li T et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).
2