Deep sequencing reads for mature sequence MIMAT0003901

Stem-loop ID ppt-MIR1212
Mature ID ppt-miR1212
Reads 
                                                            ppt-miR1212                   Count     RPM (mean number of reads per million)
.............CAUCCUCUGCUGUGCCCACAUG......................................................  44        220
.............CAUCCUCUGCUGUGCCCACAU.......................................................  5         32
.............CAUCCUCUGCUGUGCCCACA........................................................  3         9.68
..............AUCCUCUGCUGUGCCCACAUG......................................................  1         3.98
...............UCCUCUGCUGUGCCCACAUG......................................................  1         3.23
...................................CGUCGUGGCGCGUGGCGGCCGC................................  2         6.46
...................................CGUCGUGGCGCGUGGCGGCCG.................................  2         6.46
..........................................................CGUGGGACAGCAUAGAAUGCG..........  4827      2.36e+04
..........................................................CGUGGGACAGCAUAGAAU.............  40        255
..........................................................CGUGGGACAGCAUAGAAUGC...........  32        165
..........................................................CGUGGGACAGCAUAGAAUG............  18        103
..........................................................CGUGGGACAGCAUAGAA..............  13        51.8
..........................................................CGUGGGACAGCAUAGAAUGCGG.........  2         7.21
............................................................UGGGACAGCAUAGAAUGCG..........  1         3.23
GUAUGAGGAGUUGCAUCCUCUGCUGUGCCCACAUGCGUCGUGGCGCGUGGCGGCCGCGCGUGGGACAGCAUAGAAUGCGGAUCCUUGUA
.((..((((.((((((.((.((((((.(((((.((((((((.(....).)))).)))).))))))))))).)).)))))).))))..)) (-46.30)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000213 552whole body GEO : GSM115095 7 day wild-type protonemata [ Axtell MJ et al.]
ER0000000214 2833gametophore GEO : GSM115096 14 day old wild-type P. patens -- Protonemata and young Gametophores [ Axtell MJ et al.]
ER0000000215 2109gametophore GEO : GSM115097 ~60 day old wild-type mature gametophores and sporophytes [ Axtell MJ et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).