Deep sequencing reads for mature sequence MIMAT0003895

Stem-loop ID

mmu-mir-764

Mature ID

mmu-miR-764-3p

Reads

                        mmu-miR-764-5p                          mmu-miR-764-3p                                Count     RPM (mean number of reads per million)
.........................AGGUGCUCACAUGUCCUCCUCCA............................................................  1         0.0104
..........................GGUGCUCACAUGUCCUCCUCCA............................................................  40        1.46
..........................GGUGCUCACAUGUCCUCCUCC.............................................................  8         0.192
..........................GGUGCUCACAUGUCCUCCUCCAU...........................................................  7         0.108
..........................GGUGCUCACAUGUCCUCCUC..............................................................  1         0.0104
........................................................AAUACAUGGAGGAGGCCAUAGUG.............................  2         0.0207
........................................................AAUACAUGGAGGAGGCCAUAGUGG............................  1         0.301
..............................................................UGGAGGAGGCCAUAGUGGCAACU.......................  4         0.0697
...............................................................GGAGGAGGCCAUAGUGGCAACUGU.....................  1         0.0104
................................................................GAGGAGGCCAUAGUGGCAACUGU.....................  313       8.96
................................................................GAGGAGGCCAUAGUGGCAACUG......................  106       3.03
................................................................GAGGAGGCCAUAGUGGCAACU.......................  51        1.86
................................................................GAGGAGGCCAUAGUGGCAAC........................  4         0.041
................................................................GAGGAGGCCAUAGUGGCAA.........................  2         0.0202
................................................................GAGGAGGCCAUAGUGGCA..........................  1         0.0104
.................................................................AGGAGGCCAUAGUGGCAACUGU.....................  14        0.263
.................................................................AGGAGGCCAUAGUGGCAACUG......................  2         0.0207
..................................................................GGAGGCCAUAGUGGCAACUG......................  1         0.0511
..................................................................GGAGGCCAUAGUGGCAACUGU.....................  1         0.0104
..................................................................GGAGGCCAUAGUGGCAACU.......................  1         0.0104
....................................................................AGGCCAUAGUGGCAACUGU.....................  1         0.211
......................................................................GCCAUAGUGGCAACUGU.....................  1         0.301
UCAACACAAUCUGAAUCUUGGAGGCAGGUGCUCACAUGUCCUCCUCCAUGCUUAUAAAUACAUGGAGGAGGCCAUAGUGGCAACUGUCACCAUGAUUGAUUUCGUUGG
.((((..((((..((((.(((.(((((.(((.((((((.(((((((((((..........))))))))))).))).)))))).))))).))).))))))))..)))). (-49.90)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000036	14	brain	GEO : GSM510440		[ Chiang HR et al.]
ER0000000037	69	brain	GEO : GSM510441		[ Chiang HR et al.]
ER0000000038	83	brain	GEO : GSM510442		[ Chiang HR et al.]
ER0000000039	13	brain	GEO : GSM510443		[ Chiang HR et al.]
ER0000000040	346	brain	GEO : GSM510444		[ Chiang HR et al.]
ER0000000042	2	whole body	GEO : GSM510446	newborn	[ Chiang HR et al.]
ER0000000043	2	whole body	GEO : GSM510447	Newborn.	[ Chiang HR et al.]
ER0000000045	1	whole body	GEO : GSM510449	Newborn.	[ Chiang HR et al.]
ER0000000048	1	whole body	GEO : GSM510452	Newborn.	[ Chiang HR et al.]
ER0000000049	2	whole body	GEO : GSM510453	Newborn.	[ Chiang HR et al.]
ER0000000050	3	whole body	GEO : GSM510454	Newborn.	[ Chiang HR et al.]
ER0000000051	1	whole body	GEO : GSM510455	Newborn.	[ Chiang HR et al.]
ER0000000052	11	whole body	GEO : GSM510456	Newborn.	[ Chiang HR et al.]
ER0000000053	2	embryo	GEO : GSM510457	Day 12.5 embryo	[ Chiang HR et al.]
ER0000000054	2	embryo	GEO : GSM510458	day 12.5 embryo	[ Chiang HR et al.]
ER0000000055	5	embryo	GEO : GSM510459	day 12.5 embryo	[ Chiang HR et al.]
ER0000000250	95	brain	GEO : GSM539869	strain: C57BL/6J, gender: male
ER0000000251	2	lung	GEO : GSM539870	strain: C57BL/6J, gender: male

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).