Deep sequencing reads for mature sequence MIMAT0003781

Stem-loop ID mmu-mir-676
Mature ID mmu-miR-676-5p
Reads 
                 mmu-miR-676-5p                      mmu-miR-676-3p                        Count     RPM (mean number of reads per million)
................GACUCUACAACCUUAGGACUUGC..................................................  1         0.004
.................ACUCUACAACCUUAGGACUUGCA.................................................  1019      5.3
.................ACUCUACAACCUUAGGACUUGC..................................................  797       5.57
.................ACUCUACAACCUUAGGACUU....................................................  136       1.02
.................ACUCUACAACCUUAGGACUUG...................................................  114       0.798
.................ACUCUACAACCUUAGGACU.....................................................  9         0.0234
.................ACUCUACAACCUUAGGAC......................................................  7         0.0283
.................ACUCUACAACCUUAGGA.......................................................  1         0.0109
.................ACUCUACAACCUUAGGACUUGCAG................................................  1         0.00388
..................CUCUACAACCUUAGGACUUGCA.................................................  260       1.19
..................CUCUACAACCUUAGGACUUGC..................................................  74        0.434
..................CUCUACAACCUUAGGACUU....................................................  20        0.0878
..................CUCUACAACCUUAGGACUUG...................................................  3         0.0355
..................CUCUACAACCUUAGGACUUGCAG................................................  2         0.00706
...................UCUACAACCUUAGGACUUGC..................................................  63        0.957
...................UCUACAACCUUAGGACUUGCA.................................................  24        0.172
...................UCUACAACCUUAGGACUUGCAG................................................  2         0.00343
...................UCUACAACCUUAGGACUUG...................................................  2         0.0127
....................CUACAACCUUAGGACUUGC..................................................  3         0.031
....................CUACAACCUUAGGACUUGCA.................................................  2         0.0101
......................ACAACCUUAGGACUUGC..................................................  1         0.0109
....................................................UGCCGUCCUGAGGUUGUUGAG................  1         0.00262
.....................................................GCCGUCCUGAGGUUGUUGAGCU..............  1         0.0463
......................................................CCGUCCUGAGGUUGUUGAGCUGU............  4170      21.9
......................................................CCGUCCUGAGGUUGUUGAGCUG.............  3156      15.3
......................................................CCGUCCUGAGGUUGUUGAGCU..............  2868      18.6
......................................................CCGUCCUGAGGUUGUUGAGC...............  848       4.91
......................................................CCGUCCUGAGGUUGUUGAG................  790       4.52
......................................................CCGUCCUGAGGUUGUUGA.................  6         0.146
......................................................CCGUCCUGAGGUUGUUGAGCUGUG...........  5         0.0156
......................................................CCGUCCUGAGGUUGUUGAGCUGUGCGU........  2         0.00425
.......................................................CGUCCUGAGGUUGUUGAGCUG.............  67        0.232
.......................................................CGUCCUGAGGUUGUUGAGCU..............  58        0.37
.......................................................CGUCCUGAGGUUGUUGAGCUGU............  51        0.326
.......................................................CGUCCUGAGGUUGUUGAGC...............  14        0.0856
.......................................................CGUCCUGAGGUUGUUGAG................  3         0.122
.......................................................CGUCCUGAGGUUGUUGAGCUGUG...........  1         0.00213
........................................................GUCCUGAGGUUGUUGAGCU..............  12        0.0604
........................................................GUCCUGAGGUUGUUGAGCUGU............  5         0.0207
........................................................GUCCUGAGGUUGUUGAGCUG.............  3         0.00695
........................................................GUCCUGAGGUUGUUGAGC...............  2         0.0138
.........................................................UCCUGAGGUUGUUGAGCUGU............  3         0.00811
.........................................................UCCUGAGGUUGUUGAGCU..............  1         0.0106
..........................................................CCUGAGGUUGUUGAGCU..............  5         0.0477
..........................................................CCUGAGGUUGUUGAGCUG.............  2         0.0127
CUUUGCCUGAAUGCAUGACUCUACAACCUUAGGACUUGCAGAAUUAAAGGAAUGCCGUCCUGAGGUUGUUGAGCUGUGCGUUUCUGGGC
....((((((((((((..(((.(((((((((((((..(((............))).))))))))))))).)))..))))))))..)))) (-42.80)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 10ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 30ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000032 2testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 8testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 21testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 1testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 28brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 32brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 152brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 23brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 579brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 7whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 22whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 64whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 4whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 112whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 165whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 169whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 176whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 208whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 233whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 181whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 888whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 34embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 51embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 202embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 24embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 19embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 18embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 41embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 1embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 38embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 36embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 141embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 200bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 150bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 177spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 156spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 214spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 44spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 15spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 26spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 30spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 2peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 14spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 24lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 28lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 52bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 2bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 25bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 29peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 4peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 7bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 106bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 4spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 5thymus GEO : GSM539856
ER0000000239 10spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 7spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 1lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 2lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 1lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 6spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000246 2lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 634 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 299 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 111heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 1440brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 405lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 128liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 369kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 2916pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 2084skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 258skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 809salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 157testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 779ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 22spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 37lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).