Deep sequencing reads for mature sequence MIMAT0003737

Stem-loop ID mmu-mir-666
Mature ID mmu-miR-666-5p
Reads 
                  mmu-miR-666-5p                       mmu-miR-666-3p                                 Count     RPM (mean number of reads per million)
..................AGCGGGCACAGCUGUGAGAGC............................................................  1672      23
..................AGCGGGCACAGCUGUGAGAG.............................................................  826       6.72
..................AGCGGGCACAGCUGUGAGAGCCC..........................................................  560       8.75
..................AGCGGGCACAGCUGUGAGAGCC...........................................................  491       9.52
..................AGCGGGCACAGCUGUGAGAGCCCC.........................................................  453       8.87
..................AGCGGGCACAGCUGUGAGA..............................................................  390       3.63
..................AGCGGGCACAGCUGUGAG...............................................................  25        0.296
..................AGCGGGCACAGCUGUGAGAGCCCCC........................................................  7         0.167
..................AGCGGGCACAGCUGUGA................................................................  3         0.0926
...................GCGGGCACAGCUGUGAGAG.............................................................  6         0.0598
...................GCGGGCACAGCUGUGAGA..............................................................  2         0.0169
...................GCGGGCACAGCUGUGAGAGCCC..........................................................  2         0.00811
...................GCGGGCACAGCUGUGAGAGC............................................................  1         0.00359
...................GCGGGCACAGCUGUGAGAGCC...........................................................  1         0.0134
....................CGGGCACAGCUGUGAGAGCCCCCUA......................................................  1         0.0134
....................CGGGCACAGCUGUGAGAGCCCC.........................................................  1         0.00359
.....................GGGCACAGCUGUGAGAGCCCC.........................................................  17        0.411
.....................GGGCACAGCUGUGAGAGCC...........................................................  1         0.0153
......................GGCACAGCUGUGAGAGC............................................................  2         0.00811
......................GGCACAGCUGUGAGAGCCCC.........................................................  1         0.0731
......................GGCACAGCUGUGAGAGCCC..........................................................  1         0.00405
.......................GCACAGCUGUGAGAGCCCC.........................................................  1         0.0194
.........................ACAGCUGUGAGAGCCCC.........................................................  2         0.0353
................................................ACAGCGGGGCUGCAGCGUGAUCGCCU.........................  1         0.00165
................................................ACAGCGGGGCUGCAGCGUGAUCGCC..........................  1         0.0117
.................................................CAGCGGGGCUGCAGCGUGAUCGC...........................  1         0.00342
.................................................CAGCGGGGCUGCAGCGUGAUCGCCU.........................  1         0.0117
....................................................CGGGGCUGCAGCGUGAUCGCCUGCUC.....................  1         0.00342
....................................................CGGGGCUGCAGCGUGAUCGCCUGC.......................  1         0.0117
.......................................................GGCUGCAGCGUGAUCGCCUGCUC.....................  493       9.98
.......................................................GGCUGCAGCGUGAUCGCCUGCU......................  315       6.37
.......................................................GGCUGCAGCGUGAUCGCCUGC.......................  137       3.15
.......................................................GGCUGCAGCGUGAUCGCCUG........................  29        0.36
.......................................................GGCUGCAGCGUGAUCGCCUGCUCA....................  28        1.06
.......................................................GGCUGCAGCGUGAUCGCCU.........................  12        0.0945
.......................................................GGCUGCAGCGUGAUCGCCUGCUCAC...................  1         0.0694
........................................................GCUGCAGCGUGAUCGCCUGCUC.....................  91        1.25
........................................................GCUGCAGCGUGAUCGCCUGCU......................  27        0.478
........................................................GCUGCAGCGUGAUCGCCUGCUCA....................  18        0.271
........................................................GCUGCAGCGUGAUCGCCUGC.......................  6         0.157
........................................................GCUGCAGCGUGAUCGCCUG........................  2         0.0153
........................................................GCUGCAGCGUGAUCGCCUGCUCAC...................  1         0.0159
.........................................................CUGCAGCGUGAUCGCCUGCU......................  8         0.063
.........................................................CUGCAGCGUGAUCGCCUGCUC.....................  4         0.0558
.........................................................CUGCAGCGUGAUCGCCUGC.......................  2         0.0377
...........................................................GCAGCGUGAUCGCCUGCUC.....................  2         0.0262
CUGAUUCUGCCUGCGUGGAGCGGGCACAGCUGUGAGAGCCCCCUAGGUACAGCGGGGCUGCAGCGUGAUCGCCUGCUCACGCACAGGAAGUGACGACAG
(((..((..((((.(((((((((((.(((((((...((((((((......)).))))))))))).))...)))))))).))).))))....))...))) (-47.30)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 3ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000032 1testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 3testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 2testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 1testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 31brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 121brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 173brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 23brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 626brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 12whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 161whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 116whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 20whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 217whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 335whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 395whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 394whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 415whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 448whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 402whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 2062whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 46embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 304embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 292embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 37embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 16embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 67embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 54embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 4embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 3embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 10embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 13embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 4bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 1spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 1spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 1spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000229 2bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000235 13bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 51spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000243 1lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 281spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000246 2lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 323 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 194 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 3heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 359brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000254 5pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 43skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 58skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 19salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000259 16ovary GEO : GSM539878 strain: C57BL/6J, gender: female
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).